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Report for CCDS34602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34602.1 Public Homo sapiens 7 ICA1 24 110 108 CCDS HistoryNCBI Gene:3382Re-query CCDS DB by CCDS ID:34602.1Re-query CCDS DB by GeneID:3382See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 34602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396675.7 ENSP00000379908.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396675.7Link to Ensembl Protein Viewer:ENSP00000379908.3Re-query CCDS DB by Nucleotide ID:ENST00000396675Re-query CCDS DB by Protein ID:ENSP00000379908
Original member Current member EBI ENST00000402384.8 ENSP00000385570.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402384.8Link to Ensembl Protein Viewer:ENSP00000385570.3Re-query CCDS DB by Nucleotide ID:ENST00000402384Re-query CCDS DB by Protein ID:ENSP00000385570
Original member Current member EBI ENST00000406470.6 ENSP00000385651.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406470.6Link to Ensembl Protein Viewer:ENSP00000385651.2Re-query CCDS DB by Nucleotide ID:ENST00000406470Re-query CCDS DB by Protein ID:ENSP00000385651
Original member Current member NCBI NM_001136020.3 NP_001129492.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136020.3Link to Protein Sequence:NP_001129492.1Re-query CCDS DB by Nucleotide ID:NM_001136020Re-query CCDS DB by Protein ID:NP_001129492Link to BLAST:NP_001129492.1
Original member Current member NCBI NM_001350819.2 NP_001337748.1 Accepted alive Link to Nucleotide Sequence:NM_001350819.2Link to Protein Sequence:NP_001337748.1Re-query CCDS DB by Nucleotide ID:NM_001350819Re-query CCDS DB by Protein ID:NP_001337748Link to BLAST:NP_001337748.1
Original member Current member NCBI NM_001350820.2 NP_001337749.1 Accepted alive Link to Nucleotide Sequence:NM_001350820.2Link to Protein Sequence:NP_001337749.1Re-query CCDS DB by Nucleotide ID:NM_001350820Re-query CCDS DB by Protein ID:NP_001337749Link to BLAST:NP_001337749.1
Original member Current member NCBI NM_004968.4 NP_004959.2 Accepted alive Link to Nucleotide Sequence:NM_004968.4Link to Protein Sequence:NP_004959.2Re-query CCDS DB by Nucleotide ID:NM_004968Re-query CCDS DB by Protein ID:NP_004959Link to BLAST:NP_004959.2
Original member Current member NCBI NM_022307.3 NP_071682.1 Accepted alive Link to Nucleotide Sequence:NM_022307.3Link to Protein Sequence:NP_071682.1Re-query CCDS DB by Nucleotide ID:NM_022307Re-query CCDS DB by Protein ID:NP_071682Link to BLAST:NP_071682.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129492.1 483 Q05084-1 483 100% 0 0
NP_001337748.1 483 Q05084-1 483 100% 0 0
NP_001337749.1 483 Q05084-1 483 100% 0 0
NP_004959.2 483 Q05084-1 483 100% 0 0
NP_071682.1 483 Q05084-1 483 100% 0 0

Chromosomal Locations for CCDS 34602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 8113923 8114044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8127873 8128142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8138840 8138881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8138985 8139047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8141765 8141817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8143875 8143972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8157116 8157214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8158527 8158652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8218305 8218503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8221275 8221398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8228601 8228673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8232590 8232755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8235910 8235926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGTCAGGACACAAATGCAGTTATCCCTGGGACTTACAGGATCGATATGCTCAAGATAAGTCAGTTGTAA
ATAAGATGCAACAGAAATATTGGGAGACGAAGCAGGCCTTTATTAAAGCCACAGGGAAGAAGGAAGATGA
ACATGTTGTTGCCTCTGACGCGGACCTGGATGCCAAGCTAGAGCTGTTTCATTCAATTCAGAGAACCTGT
CTGGACTTATCGAAAGCAATTGTACTCTATCAAAAGAGGATATGTTTCTTGTCTCAAGAAGAAAACGAAC
TGGGAAAATTTCTTCGATCCCAAGGTTTCCAAGATAAAACCAGAGCAGGAAAGATGATGCAAGCGACAGG
AAAGGCCCTCTGCTTTTCTTCCCAGCAAAGGTTGGCCTTACGAAATCCTTTGTGTCGATTTCACCAAGAA
GTGGAGACTTTTCGGCATCGGGCCATCTCAGATACTTGGCTGACGGTGAACCGCATGGAACAGTGCAGGA
CGGAATATAGAGGAGCACTATTATGGATGAAGGACGTGTCTCAGGAGCTTGATCCAGACCTCTACAAGCA
AATGGAGAAGTTCAGGAAGGTACAAACACAAGTGCGCCTTGCAAAAAAAAACTTTGACAAATTGAAGATG
GATGTTTGTCAAAAAGTGGATCTTCTTGGAGCGAGCAGATGCAATCTCTTGTCTCACATGCTAGCAACAT
ACCAGACCACTCTGCTTCATTTTTGGGAGAAAACTTCTCACACTATGGCAGCCATCCATGAGAGTTTCAA
AGGTTATCAACCATATGAATTTACTACTTTAAAGAGCTTACAAGACCCTATGAAAAAATTAGTTGAGAAA
GAAGAGAAGAAGAAAATCAACCAGCAGGAAAGTACAGATGCAGCCGTGCAGGAGCCGAGCCAATTAATTT
CATTAGAGGAAGAAAACCAGCGCAAGGAATCCTCTAGTTTTAAGACTGAAGATGGAAAAAGTATTTTATC
TGCCTTAGACAAAGGCTCTACACATACTGCATGCTCAGGACCCATAGATGAACTATTAGACATGAAATCT
GAGGAAGGTGCTTGCCTGGGACCAGTGGCAGGGACCCCGGAACCTGAAGGTGCTGACAAAGATGACCTGC
TGCTGTTGAGTGAGATCTTCAATGCTTCCTCCTTGGAAGAGGGCGAGTTCAGCAAAGAGTGGGCCGCTGT
GTTTGGAGACGGCCAAGTGAAGGAGCCAGTGCCCACTATGGCCCTGGGAGAGCCAGACCCCAAGGCCCAG
ACAGGCTCAGGTTTCCTTCCTTCGCAGCTTTTAGACCAAAATATGAAAGACTTACAGGCCTCGCTACAAG
AACCTGCTAAGGCTGCCTCAGACCTGACTGCCTGGTTCAGCCTCTTCGCTGACCTCGACCCACTCTCAAA
TCCTGATGCTGTTGGGAAAACCGATAAAGAACACGAATTGCTCAATGCATGA

Translation (483 aa):
MSGHKCSYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTC
LDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQE
VETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKM
DVCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEK
EEKKKINQQESTDAAVQEPSQLISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKS
EEGACLGPVAGTPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQ
TGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELLNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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