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Report for CCDS33858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33858.1 Public Homo sapiens 3 TMEM108 24 110 108 CCDS HistoryNCBI Gene:66000Re-query CCDS DB by CCDS ID:33858.1Re-query CCDS DB by GeneID:66000See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321871.11 ENSP00000324651.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321871.11Link to Ensembl Protein Viewer:ENSP00000324651.6Re-query CCDS DB by Nucleotide ID:ENST00000321871Re-query CCDS DB by Protein ID:ENSP00000324651
Original member Current member EBI ENST00000393130.7 ENSP00000376838.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393130.7Link to Ensembl Protein Viewer:ENSP00000376838.3Re-query CCDS DB by Nucleotide ID:ENST00000393130Re-query CCDS DB by Protein ID:ENSP00000376838
Original member Current member NCBI NM_001136469.3 NP_001129941.1 Accepted alive Link to Nucleotide Sequence:NM_001136469.3Link to Protein Sequence:NP_001129941.1Re-query CCDS DB by Nucleotide ID:NM_001136469Re-query CCDS DB by Protein ID:NP_001129941Link to BLAST:NP_001129941.1
Original member Current member NCBI NM_023943.4 NP_076432.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023943.4Link to Protein Sequence:NP_076432.1Re-query CCDS DB by Nucleotide ID:NM_023943Re-query CCDS DB by Protein ID:NP_076432Link to BLAST:NP_076432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129941.1 575 Q6UXF1-1 575 100% 0 0
NP_076432.1 575 Q6UXF1-1 575 100% 0 0

Chromosomal Locations for CCDS 33858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 133229312 133229351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133379752 133381161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133390180 133390334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133395864 133395986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGAAGAGAAGTTTACAGGCCCTCTATTGCCAACTGTTAAGTTTCCTGCTGATCTTGGCACTGACCGAAG
CGCTGGCATTTGCCATCCAGGAACCATCTCCCAGGGAATCTCTTCAGGTCCTCCCTTCAGGCACTCCCCC
GGGAACCATGGTGACAGCACCCCACAGCTCTACCAGACATACTTCTGTGGTGATGCTGACCCCCAATCCC
GATGGACCCCCCTCACAGGCTGCAGCTCCCATGGCAACACCGACACCCCGTGCAGAGGGGCACCCTCCTA
CGCACACCATCTCCACCATCGCTGCGACAGTAACCGCCCCCCATTCTGAAAGCTCCCTGTCCACAGGGCC
CGCTCCAGCAGCCATGGCAACCACATCCTCCAAGCCAGAGGGCCGCCCTCGAGGGCAGGCTGCCCCCACC
ATCCTGCTGACAAAGCCACCGGGGGCCACCAGCCGCCCCACCACAGCGCCCCCCCGCACTACCACACGCA
GGCCCCCCAGGCCCCCAGGCTCTTCCCGAAAAGGGGCTGGTAATTCATCACGCCCTGTCCCGCCTGCACC
TGGTGGCCACTCCAGGAGTAAAGAAGGACAGCGAGGACGAAATCCAAGCTCCACACCTCTGGGGCAGAAG
CGGCCCCTGGGGAAAATCTTTCAGATCTACAAGGGCAACTTCACAGGGTCTGTGGAACCGGAGCCCTCTA
CCCTCACCCCCAGGACCCCACTCTGGGGCTACTCCTCTTCACCACAGCCCCAGACAGTGGCTGCGACCAC
AGTGCCCAGCAATACCTCATGGGCACCCACCACCACCTCCCTGGGGCCTGCAAAGGACAAGCCAGGCCTT
CGCAGAGCAGCCCAGGGGGGTGGTTCTACCTTCACCAGCCAAGGAGGGACACCAGATGCCACAGCAGCCT
CAGGTGCCCCTGTCAGTCCACAAGCTGCCCCAGTGCCTTCTCAGCGCCCCCACCACGGTGACCCACAGGA
TGGCCCCAGCCATAGTGACTCTTGGCTTACTGTTACCCCTGGCACCAGCAGACCTCTGTCTACCAGCTCT
GGGGTCTTCACGGCTGCCACGGGGCCCACCCCAGCTGCCTTCGATACCAGTGTCTCAGCCCCTTCCCAGG
GGATTCCTCAGGGAGCATCCACAACCCCACAAGCTCCAACCCATCCCTCCAGGGTCTCAGAAAGCACTAT
TTCTGGAGCCAAGGAGGAGACTGTGGCCACCCTCACCATGACCGACCGGGTGCCCAGTCCTCTCTCCACA
GTGGTATCCACAGCCACAGGCAATTTCCTCAACCGCCTGGTCCCCGCCGGGACCTGGAAGCCTGGGACAG
CAGGGAACATCTCCCATGTGGCCGAGGGGGACAAACCGCAGCACAGAGCCACCATCTGCCTGAGCAAGAT
GGATATCGCCTGGGTGATCCTGGCCATCAGCGTGCCCATCTCCTCCTGCTCTGTCCTGCTGACGGTGTGC
TGCATGAAGAGGAAGAAGAAGACCGCCAACCCGGAGAACAACCTGAGCTACTGGAACAACACCATCACCA
TGGACTACTTCAACAGGCATGCTGTGGAGCTGCCCAGGGAGATCCAGTCCCTTGAAACCTCTGAGGACCA
GCTCTCAGAGCCCCGCTCCCCAGCCAATGGCGACTATAGAGACACTGGGATGGTCCTTGTTAACCCCTTC
TGTCAAGAAACACTGTTTGTGGGAAACGATCAAGTATCTGAGATCTAA

Translation (575 aa):
MKRSLQALYCQLLSFLLILALTEALAFAIQEPSPRESLQVLPSGTPPGTMVTAPHSSTRHTSVVMLTPNP
DGPPSQAAAPMATPTPRAEGHPPTHTISTIAATVTAPHSESSLSTGPAPAAMATTSSKPEGRPRGQAAPT
ILLTKPPGATSRPTTAPPRTTTRRPPRPPGSSRKGAGNSSRPVPPAPGGHSRSKEGQRGRNPSSTPLGQK
RPLGKIFQIYKGNFTGSVEPEPSTLTPRTPLWGYSSSPQPQTVAATTVPSNTSWAPTTTSLGPAKDKPGL
RRAAQGGGSTFTSQGGTPDATAASGAPVSPQAAPVPSQRPHHGDPQDGPSHSDSWLTVTPGTSRPLSTSS
GVFTAATGPTPAAFDTSVSAPSQGIPQGASTTPQAPTHPSRVSESTISGAKEETVATLTMTDRVPSPLST
VVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRATICLSKMDIAWVILAISVPISSCSVLLTVC
CMKRKKKTANPENNLSYWNNTITMDYFNRHAVELPREIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPF
CQETLFVGNDQVSEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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