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Report for CCDS26640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26640.1 Public Mus musculus 13 Exoc3 23 108 98 CCDS HistoryNCBI Gene:211446Re-query CCDS DB by CCDS ID:26640.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035934.6 ENSMUSP00000039416.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035934.6Link to Ensembl Protein Viewer:ENSMUSP00000039416.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035934Re-query CCDS DB by Protein ID:ENSMUSP00000039416
Original member Current member NCBI NM_177333.4 NP_796307.2 Accepted alive Link to Nucleotide Sequence:NM_177333.4Link to Protein Sequence:NP_796307.2Re-query CCDS DB by Nucleotide ID:NM_177333Re-query CCDS DB by Protein ID:NP_796307Link to BLAST:NP_796307.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796307.2 755 Q6KAR6 755 100% 0 0

Chromosomal Locations for CCDS 26640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74172073 74172244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74173296 74173423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74173987 74174148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74180435 74180557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74182044 74182194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74182277 74182387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74184673 74184773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74189161 74189286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74190070 74190187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74192608 74193289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74199456 74199675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74206907 74207080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2268 nt):
ATGTGCAAAGATTCTGCCTGCTTTTTGACAATGAAGGAGACAGACCTGGAGGCTGTTGCAACAGCAGTCC
AAAGGGTTGCTGGGATGCTTCAGCGCCCAGACCAACTGGACAAAGTGGAGCAGTATCGCAGAAGGGAAGC
TCGGAAGAAGGCCTCTGTAGAGGCCAGGCTAAAGGCTGCAATCCAGTCTCAACTAGATGGGGTACGCACA
GGCTTAAGCCAACTGCACAATGCACTGAATGACGTCAAGGATATCCAGCAGTCACTGGCTGATGTCAGCA
AGGACTGGAGGCAAAGCATCAACACCATTGAGAGTCTCAAAGATGTAAAAGATGCAGTGGTGCAGCATAG
CCAGCTGGCTGCAGCTGTGGAGAACCTCAAGAACATATTCTCAGTGCCTGAGATTGTGAGGGAGACCCAA
GATCTCATCGAGCAAGGGGCCCTCCTGCAAGCCCACCGGAAGCTAATGGATCTGGAGTGCTCTCGGGATG
GGCTAATGTGTGAGCAGTACCGCATGGACAGTGGGAACAAACGGGACATGACCCTCATTCATGGCTACTT
TGGTAGCACACAGGGGCTCTCTGATGAGCTGGCTAAGCAGCTGTGGATGGTGCTGCAAAGATCACTGGTC
ACTGTCCGCCGGGATCCTACCTTGCTGGTCTCCGTGGTCAGAATCATTGAAAGGGAAGAAAAAATTGACA
GGCGGATACTTGATCGAAAAAAGCAAACTGGGTTTGTTCCTCCTGGAAGGCCCAAAAACTGGAAAGAAAA
AATGTTTGCCATCTTGGACAGAACTGTGACAACTAGAATCGAAGGTACACAGGCAGACACCAGAGAATCT
GACAAGATGTGGCTTGTGCGCCACCTGGAGATCATTAGGAAGTATGTCCTGGATGATCTCATTGTTGCCA
AGAACCTGATGGTCCAGTGCTTCCCTCCTCACTATGAGATCTTTAAGAACCTCCTGAGCATGTACCACCA
GGCCTTGAGCACTCGGATGCAGGACCTTGCATCAGAGGACCTTGAGGCCAACGAGATTGTGAGCCTCTTG
ACATGGGTCCTAAATACCTACACCAGTGCAGAGATGATGGGGAATGTGGAACTAGCCCCAGAAGTGGATG
TTAGTGCCCTGGAGCCCCTCCTCTCTCCAAACATCGTCTCCGAGCTGCTTGACACATACATGTCAACACT
CACGTCCAACATCATTGCCTGGCTTCGGAAAGCACTGGAAACAGACAAGAAAGACTGGAGCAAAGAGACA
GAGCCAGAAGCAGACCAGGATGGTTACTATCAGACTACACTTCCTGCCATTGTATTCCAGATGTTCGAAC
AGAATCTTCAAGTTGCTGCTCAAATAAGTGAAGATTTGAAAACAAAGGTATTAGTGTTGTGTCTTCAGCA
AATGAATTCTTTCCTAAGTAGATACAAAGATGAAGCCCAGCTTTACAAAGAAGAGCACCTGAGAAACCGG
CAACACCCACACTGTTATGTGCAGTACATGATTGCCATCATCAATAACTGCCAGACCTTCAAAGAATCCA
TCATCAGTCTGAAAAGGAAGTACCTAAAAACTGAAGCAGAGGAGGGCCTGTGTCTGAGTCAGCCAAGCAT
GGATGGGATTCTAGACGCCATTGCTAAGGAAGGCTGCAGCAGTCTGCTAGAGGAGGTCTTCCTGGATCTA
GAGCAACATCTGAATGAGCTGATGACAAAGAAGTGGTTGTTAGGGTCAAACGCTGTGGACATCATCTGTG
TCACTGTAGAAGACTACTTCAATGACTTTGCCAAAATTAAAAAGCCATATAAAAAGAGAATGACAGCTGA
GGCACACAGACGTGTGGTGGTGGAATACCTGCGGGCTGTCATGCAGAAGCGTATTTCCTTTCGGAGTGCT
GAAGAGCGCAAGGAGGGCGCCGAGAAGATGGTCAGAGAGGCTGAACAGCTCCGCTTCCTGTTCCGGAAGC
TGGCGTCTGGATTTGGTGAGGATGCAGATGGACACTGTGATACAATTGTTGCAGTGGCAGAGGTCATTAA
GCTCACAGACCCTTCTCTGCTCTATCTAGAAGTCTCAACTCTGGTCAGCAAATATCCAGACATCAGAGAT
GACCACATTGGTGCACTGCTGGCACTGCGAGGAGATGCCAGCCGGGACATGAAACAGACCATCATGGAGA
CGCTGGAGCAGGGCCCCATGCAAGCAAGCCCCAACTATGTACCCATCTTCAAGGAGATTGTTGTGCCCAG
TCTGAACGTGGCAAAGCTCCTTAAGTAG

Translation (755 aa):
MCKDSACFLTMKETDLEAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQLDGVRT
GLSQLHNALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVQHSQLAAAVENLKNIFSVPEIVRETQ
DLIEQGALLQAHRKLMDLECSRDGLMCEQYRMDSGNKRDMTLIHGYFGSTQGLSDELAKQLWMVLQRSLV
TVRRDPTLLVSVVRIIEREEKIDRRILDRKKQTGFVPPGRPKNWKEKMFAILDRTVTTRIEGTQADTRES
DKMWLVRHLEIIRKYVLDDLIVAKNLMVQCFPPHYEIFKNLLSMYHQALSTRMQDLASEDLEANEIVSLL
TWVLNTYTSAEMMGNVELAPEVDVSALEPLLSPNIVSELLDTYMSTLTSNIIAWLRKALETDKKDWSKET
EPEADQDGYYQTTLPAIVFQMFEQNLQVAAQISEDLKTKVLVLCLQQMNSFLSRYKDEAQLYKEEHLRNR
QHPHCYVQYMIAIINNCQTFKESIISLKRKYLKTEAEEGLCLSQPSMDGILDAIAKEGCSSLLEEVFLDL
EQHLNELMTKKWLLGSNAVDIICVTVEDYFNDFAKIKKPYKKRMTAEAHRRVVVEYLRAVMQKRISFRSA
EERKEGAEKMVREAEQLRFLFRKLASGFGEDADGHCDTIVAVAEVIKLTDPSLLYLEVSTLVSKYPDIRD
DHIGALLALRGDASRDMKQTIMETLEQGPMQASPNYVPIFKEIVVPSLNVAKLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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