NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22462.1 Public Mus musculus 8 Asf1b 23 108 98 CCDS HistoryNCBI Gene:66929Re-query CCDS DB by CCDS ID:22462.1Re-query CCDS DB by GeneID:66929See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005607.8 ENSMUSP00000005607.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005607.8Link to Ensembl Protein Viewer:ENSMUSP00000005607.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005607Re-query CCDS DB by Protein ID:ENSMUSP00000005607
Original member Current member NCBI NM_024184.2 NP_077146.1 Accepted alive Link to Nucleotide Sequence:NM_024184.2Link to Protein Sequence:NP_077146.1Re-query CCDS DB by Nucleotide ID:NM_024184Re-query CCDS DB by Protein ID:NP_077146Link to BLAST:NP_077146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077146.1 202 Q9DAP7 202 100% 0 0

Chromosomal Locations for CCDS 22462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83955829 83955937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83965031 83965146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83967834 83968010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83969134 83969340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGCCAAGGTGTCGGTGCTGAATGTGGCTGTGCTGGAGAACCCGAGCCCTTTCCACAGCCCCTTCCGGT
TCGAGATCAGCTTCGAATGCAGTGAGGCCCTGTCTGACGACCTGGAGTGGAAGATCATTTATGTGGGCTC
AGCTGAGAGTGAGGAGTTTGATCAGATCCTAGATTCAGTGCTGGTGGGCCCTGTCCCTGCAGGAAGGCAT
ATGTTCGTCTTTCAGGCTGATGCCCCAAACCCATCCCTCATTCCTGAGACGGACGCCGTGGGTGTGACTG
TGGTTCTCATCACCTGCACCTACCATGGACAAGAGTTCATCCGTGTGGGCTACTATGTCAACAATGAGTA
CCCAGACCCAGAGCTTCGAGAGAACCCACCCCCAAAGCCAGACTTCTCTCAGCTACAGCGGAACATCTTG
GCCTCTAACCCCCGGGTGACCCGATTCCATATCAACTGGGACAACAATCCAGACAGTCTGGAAGCCATAG
AAAACCAGGACCCCAATGTGGACTTCAGCCTTTCCCTCAGTTGCACTCCTGTTAAAAGCCTGGGCCTCCC
TAGTTGCATCCCAGGCCTCCTCCCTGAGAACTCCATGGATTGCATCTGA

Translation (202 aa):
MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALSDDLEWKIIYVGSAESEEFDQILDSVLVGPVPAGRH
MFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYPDPELRENPPPKPDFSQLQRNIL
ASNPRVTRFHINWDNNPDSLEAIENQDPNVDFSLSLSCTPVKSLGLPSCIPGLLPENSMDCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH