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Report for CCDS29015.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
29015.1 |
Public |
Mus musculus |
17 |
Mcfd2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:193813](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:29015.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:193813](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 29015.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000024963.10 |
ENSMUSP00000024963.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000024963.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000024963.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000024963](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000024963](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000144236.8 |
ENSMUSP00000121820.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000144236.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000121820.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000144236](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000121820](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000129616.7 |
ENSMUSP00000123352.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000129616.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000123352.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000129616](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000123352](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_139295.3 |
NP_647456.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_139295.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_647456.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_139295](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_647456](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_647456.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_176808.5 |
NP_789778.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_176808.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_789778.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_176808](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_789778](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_789778.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 29015.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (438 nt): ATGGCAACCCTACAGCTGCTCAGAGCTCCCTTGCTGTGTGTCCTGCTTTGGGTCTTTTGTGCTCCAGGTG CCAGAGCCCATGACCACGGGGCTGATGTCCATCATGGCAGCGTGGGCCTGGATAAGAGCACAGTGCACGA CCAAGAGCACATCATGGAACATCTGGAAGGTGTCATCGACCAGCCAGAGGCGGAGATGTCCCCACAGGAA CTGCAGCTCCATTACTTCAAAATGCATGATTACGACGGCAACAGTTTGCTTGACGGCCTAGAGCTCTCCA TAGCCATCACTCACGTGCACAAGGAGGAGGGGAGTGAGCAGGCGCCAGTCATGAGCGAGGATGAGCTCGT CAGCATCATAGATGGTGTCCTGAGGGACGATGACAAGAACAACGACGGCTACATCGACTACGCTGAGTTT GCAAAGTCACTGCAGTAG
Translation (145 aa): MATLQLLRAPLLCVLLWVFCAPGARAHDHGADVHHGSVGLDKSTVHDQEHIMEHLEGVIDQPEAEMSPQE LQLHYFKMHDYDGNSLLDGLELSIAITHVHKEEGSEQAPVMSEDELVSIIDGVLRDDDKNNDGYIDYAEF AKSLQ
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