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Report for CCDS88987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88987.1 Public Mus musculus 17 T2 23 108 98 CCDS HistoryNCBI Gene:21331Re-query CCDS DB by CCDS ID:88987.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 88987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163578.7 ENSMUSP00000156321.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163578.7Link to Ensembl Protein Viewer:ENSMUSP00000156321.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163578Re-query CCDS DB by Protein ID:ENSMUSP00000156321
Original member Current member NCBI NM_001161832.1 NP_001155304.1 Accepted alive Link to Nucleotide Sequence:NM_001161832.1Link to Protein Sequence:NP_001155304.1Re-query CCDS DB by Nucleotide ID:NM_001161832Re-query CCDS DB by Protein ID:NP_001155304Link to BLAST:NP_001155304.1

Chromosomal Locations for CCDS 88987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8372396 8372503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8389336 8389410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8390904 8391042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8392211 8392311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8396761 8396874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8411818 8411901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8413051 8413157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8417181 8417241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8417994 8418220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8421608 8421722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8422105 8422155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCCCAGATCTTGAGAGACCATTTTAAAACGCCAAAGAAACACAGGGGGTGTCACACCCAAGTGGAGG
ACAAAGAGAAGGCAGCACAGCAGACCTTGCCGGAACAGTCGCAGCCCGAAGCTTGGTCAGCATCCCCGCC
CAAGGCTTCAACCAGGTTCCCTTCCAGGTCCAACGCCTACCTGATTATAGGGTTGCAAAACGAGCTGACC
AAATGTGGGATCTTGAAGAACATGAGCGACGACGAGGATTTCTGGAAACTGGTTCAGGAGGAAGCTCTTG
GAGTGGGAACTAAAGAAAAGCTCCAGAAGATAAAACTTAAGTTGATGAATCCCAGGCCCTGGCCACCAGC
TGCTTCCAGGAGAAGGGAGACCGAGATGCTGGTCAGCAGTGATCAAGACAGTGGGGCACGCCAGGGAACA
CAGGACCATCCAGGGAGAGAACAGGAAGTTGTGGAGGATGGCCCGGAGAAGGAGAGGATAAAACAGGGCC
CGCACCAACCTGGCTTGGATCCACCCAAGCATCGAGGGGACACAGCGAGTCTTCTCGCTCGGCTCACGGA
ATGGAGAAAAAGATGCCAACAGCATGGAGCTGCCCAGAGGCTGCATCGAGGACCTGAGGAGAGCAAGACT
ATGTGTAAGACAAGGACGGATTCCCAAAGCAAGATGTATCTTAGCCGGTTGTATCGGATGTATTCCACCT
CCCTTGCTAACATGGAATTCTCCAGAAAACTGCTGGAAAGAGATGGCCGCTTTGCAGACATGGATGCTGA
GCACAGGGCCCGAAGCCTGCTGGATTACATGGTCCCAAGAGAACGTACACAGGCAGATGTTCCACCAAGA
GAACGTACACAGGCAGATGTTCCACCAAGGGAACTAGAGGAGGAGGACTCCCCAACCCCTGAGCAGCAGC
CTCAAGCAGGACCTGCCCTCCGATTTCTGAAGTGCCAGAGCCCAGAAAGTCCACAGAGACGTCCCCACCT
GAAGACAGGAAGACACCAAGTGACCCTGTGTGGCACGAGCAAGCTCTCCGAACACGAGAGGGGCACACTT
GCTCCTGCCAGGAGGACCACAGATCCCAGACCTACAGCACCCCTGACCCTTGCACACGTGATCCAGACCC
ATCCTGTGGTGGAGGCCAAGACAGCAAGTCGATACTGGGTGAACAATGTGGATGAAGAATAA

Translation (393 aa):
MAQILRDHFKTPKKHRGCHTQVEDKEKAAQQTLPEQSQPEAWSASPPKASTRFPSRSNAYLIIGLQNELT
KCGILKNMSDDEDFWKLVQEEALGVGTKEKLQKIKLKLMNPRPWPPAASRRRETEMLVSSDQDSGARQGT
QDHPGREQEVVEDGPEKERIKQGPHQPGLDPPKHRGDTASLLARLTEWRKRCQQHGAAQRLHRGPEESKT
MCKTRTDSQSKMYLSRLYRMYSTSLANMEFSRKLLERDGRFADMDAEHRARSLLDYMVPRERTQADVPPR
ERTQADVPPRELEEEDSPTPEQQPQAGPALRFLKCQSPESPQRRPHLKTGRHQVTLCGTSKLSEHERGTL
APARRTTDPRPTAPLTLAHVIQTHPVVEAKTASRYWVNNVDEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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