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Report for CCDS46461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46461.1 Public Homo sapiens 2 PRKRA 24 110 108 CCDS HistoryNCBI Gene:8575Re-query CCDS DB by CCDS ID:46461.1Re-query CCDS DB by GeneID:8575See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487082.5 ENSP00000430604.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487082.5Link to Ensembl Protein Viewer:ENSP00000430604.1Re-query CCDS DB by Nucleotide ID:ENST00000487082Re-query CCDS DB by Protein ID:ENSP00000430604
Original member Current member NCBI NM_001139518.1 NP_001132990.1 Accepted alive Link to Nucleotide Sequence:NM_001139518.1Link to Protein Sequence:NP_001132990.1Re-query CCDS DB by Nucleotide ID:NM_001139518Re-query CCDS DB by Protein ID:NP_001132990Link to BLAST:NP_001132990.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001132990.1 288 O75569-3 288 100% 0 0

Chromosomal Locations for CCDS 46461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178432097 178432254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178436145 178436319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178441610 178441704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178443267 178443384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178444422 178444500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178447505 178447586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178450242 178450401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGATAACAGCTAAGCCAGGGAAAACACCGATTCAGGTATTACACGAATACGGCATGAAGACCAAGAACA
TCCCAGTTTATGAATGTGAAAGATCTGATGTGCAAATACACGTGCCCACTTTCACCTTCAGAGTAACCGT
TGGTGACATAACCTGCACAGGTGAAGGTACAAGTAAGAAGCTGGCGAAACATAGAGCTGCAGAGGCTGCC
ATAAACATTTTGAAAGCCAATGCAAGTATTTGCTTTGCAGTTCCTGACCCCTTAATGCCTGACCCTTCCA
AGCAACCAAAGAACCAGCTTAATCCTATTGGTTCATTACAGGAATTGGCTATTCATCATGGCTGGAGACT
TCCTGAATATACCCTTTCCCAGGAGGGAGGACCTGCTCATAAGAGAGAATATACTACAATTTGCAGGCTA
GAGTCATTTATGGAAACTGGAAAGGGGGCATCAAAAAAGCAAGCCAAAAGGAATGCTGCTGAGAAATTTC
TTGCCAAATTTAGTAATATTTCTCCAGAGAACCACATTTCTTTAACAAATGTAGTAGGACATTCTTTAGG
ATGTACTTGGCATTCCTTGAGGAATTCTCCTGGTGAAAAGATCAACTTACTGAAAAGAAGCCTCCTTAGT
ATTCCAAATACAGATTACATCCAGCTGCTTAGTGAAATTGCCAAGGAACAAGGTTTTAATATAACATATT
TGGATATAGATGAACTGAGCGCCAATGGACAATATCAATGTCTTGCTGAACTGTCCACCAGCCCCATCAC
AGTCTGTCATGGCTCCGGTATCTCCTGTGGCAATGCACAAAGTGATGCAGCTCACAATGCTTTGCAGTAT
TTAAAGATAATAGCAGAAAGAAAGTAA

Translation (288 aa):
MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAA
INILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL
ESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLS
IPNTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQY
LKIIAERK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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