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Report for CCDS6070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6070.1 Public Homo sapiens 8 EXTL3 24 110 108 CCDS HistoryNCBI Gene:2137Re-query CCDS DB by CCDS ID:6070.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6070.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220562.9 ENSP00000220562.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220562.9Link to Ensembl Protein Viewer:ENSP00000220562.4Re-query CCDS DB by Nucleotide ID:ENST00000220562Re-query CCDS DB by Protein ID:ENSP00000220562
Original member Current member EBI ENST00000696177.1 ENSP00000512467.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696177.1Link to Ensembl Protein Viewer:ENSP00000512467.1Re-query CCDS DB by Nucleotide ID:ENST00000696177Re-query CCDS DB by Protein ID:ENSP00000512467
Original member Current member EBI ENST00000696178.1 ENSP00000512468.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696178.1Link to Ensembl Protein Viewer:ENSP00000512468.1Re-query CCDS DB by Nucleotide ID:ENST00000696178Re-query CCDS DB by Protein ID:ENSP00000512468
Original member Current member EBI ENST00000696184.1 ENSP00000512473.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696184.1Link to Ensembl Protein Viewer:ENSP00000512473.1Re-query CCDS DB by Nucleotide ID:ENST00000696184Re-query CCDS DB by Protein ID:ENSP00000512473
Original member Current member EBI ENST00000696186.1 ENSP00000512474.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696186.1Link to Ensembl Protein Viewer:ENSP00000512474.1Re-query CCDS DB by Nucleotide ID:ENST00000696186Re-query CCDS DB by Protein ID:ENSP00000512474
Original member Current member NCBI NM_001440.4 NP_001431.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001440.4Link to Protein Sequence:NP_001431.1Re-query CCDS DB by Nucleotide ID:NM_001440Re-query CCDS DB by Protein ID:NP_001431Link to BLAST:NP_001431.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001431.1 919 O43909 919 100% 0 0

Chromosomal Locations for CCDS 6070.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 28716060 28718207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28731223 28731350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28737519 28737663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28743086 28743214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 28750657 28750866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGACAGGCTATACCATGCTGCGGAATGGGGGCGCGGGGAACGGAGGTCAGACCTGCATGCTGCGCTGGT
CCAACCGCATCCGCCTCACGTGGCTCAGCTTCACGCTCTTTGTCATCCTGGTCTTCTTCCCGCTCATCGC
CCACTATTACCTCACCACTCTGGATGAGGCTGATGAGGCAGGCAAGCGGATTTTTGGTCCCCGGGTGGGG
AACGAGCTGTGCGAGGTGAAGCACGTGCTGGATCTGTGCCGCATCCGGGAGTCGGTGAGTGAAGAGCTCC
TGCAGCTGGAGGCCAAGCGCCAAGAGCTGAACAGCGAGATCGCCAAGCTGAATCTGAAGATCGAAGCCTG
TAAGAAGAGCATTGAGAACGCCAAGCAGGACCTGCTCCAGCTCAAGAATGTCATCAGCCAGACCGAGCAT
TCCTACAAGGAGCTCATGGCCCAGAACCAGCCCAAGCTGTCCCTGCCCATCCGACTGCTCCCAGAGAAGG
ACGATGCCGGCCTCCCTCCCCCGAAGGCCACTCGGGGCTGCCGGCTACACAACTGCTTTGATTATTCTCG
TTGCCCTCTCACCTCTGGCTTCCCGGTCTACGTCTATGACAGTGACCAGTTTGTCTTTGGCAGCTACCTG
GATCCCTTGGTCAAGCAGGCTTTTCAGGCGACAGCACGAGCTAACGTTTATGTTACAGAAAATGCAGACA
TCGCCTGCCTTTACGTGATACTAGTGGGAGAGATGCAGGAGCCGGTGGTGCTGCGGCCTGCTGAGCTGGA
GAAGCAGTTGTATTCCCTGCCACACTGGCGGACGGATGGACACAACCATGTCATCATCAATCTGTCACGT
AAGTCAGATACACAGAACCTTCTCTATAACGTCAGTACTGGCCGTGCCATGGTGGCCCAGTCCACCTTCT
ACACTGTCCAGTACAGACCTGGCTTTGACTTGGTCGTATCACCGCTGGTCCATGCCATGTCTGAGCCCAA
CTTCATGGAAATCCCACCACAGGTGCCGGTGAAGCGGAAATATCTCTTCACCTTCCAGGGCGAGAAGATT
GAGTCTCTGAGGTCTAGCCTTCAGGAGGCCCGCTCCTTCGAAGAGGAAATGGAGGGCGACCCTCCCGCCG
ACTACGATGACCGGATCATTGCCACCCTGAAGGCGGTGCAGGACAGCAAGCTGGATCAGGTCCTGGTGGA
ATTCACCTGCAAAAACCAGCCCAAACCCAGCCTGCCGACTGAGTGGGCACTGTGTGGAGAGCGGGAGGAC
CGCTTGGAATTGCTGAAGCTCTCCACCTTCGCCCTCATCATTACCCCCGGGGACCCTCGCTTGGTTATTT
CCTCTGGGTGTGCAACACGGCTCTTCGAAGCCCTGGAAGTCGGTGCCGTCCCGGTGGTGCTGGGGGAGCA
GGTCCAGCTTCCCTACCAGGACATGCTGCAGTGGAACGAGGCGGCCCTGGTGGTGCCAAAGCCTCGTGTT
ACCGAGGTTCATTTCCTGCTCAGAAGCCTCTCCGATAGTGACCTCCTGGCTATGAGGCGGCAAGGCCGCT
TTCTCTGGGAGACTTACTTCTCCACTGCTGACAGTATTTTTAATACCGTGCTGGCTATGATTAGGACTCG
CATCCAGATCCCAGCCGCTCCCATCCGGGAAGAGGCGGCAGCTGAGATCCCCCACCGTTCAGGCAAGGCG
GCTGGAACTGACCCCAACATGGCTGACAACGGGGACCTGGACCTGGGGCCAGTGGAGACGGAGCCGCCCT
ACGCCTCACCCAGATACCTCCGCAATTTCACTCTGACTGTCACTGACTTTTACCGCAGCTGGAACTGTGC
TCCAGGGCCTTTCCATCTTTTCCCCCACACTCCCTTTGACCCTGTGTTGCCCTCAGAGGCCAAATTCTTG
GGCTCAGGGACTGGCTTTCGGCCTATTGGTGGTGGAGCTGGGGGTTCTGGCAAGGAATTTCAGGCAGCGC
TTGGAGGCAATGTTCCCCGAGAGCAGTTCACGGTGGTGATGTTGACTTATGAGCGGGAGGAAGTGCTTAT
GAACTCTTTAGAGAGGCTGAATGGCCTCCCTTACCTGAACAAGGTCGTGGTGGTGTGGAATTCTCCCAAG
CTGCCATCAGAGGACCTTCTGTGGCCTGACATTGGCGTCCCCATCATGGTGGTCCGTACTGAGAAGAACA
GTTTGAACAACCGATTCTTACCCTGGAATGAAATTGAGACAGAGGCCATCCTGTCCATTGATGACGATGC
TCACCTCCGCCATGACGAAATCATGTTTGGGTTCCGGGTGTGGAGAGAAGCTCGGGACCGCATCGTGGGC
TTCCCTGGCCGTTACCACGCATGGGACATCCCCCATCAGTCCTGGCTCTACAACTCCAACTACTCCTGTG
AGCTGTCCATGGTGCTGACAGGTGCTGCCTTCTTTCACAAGTATTATGCCTACCTGTATTCTTATGTGAT
GCCCCAGGCCATCCGGGACATGGTGGATGAATACATCAACTGTGAGGACATTGCCATGAACTTCCTTGTC
TCCCACATCACTCGGAAGCCCCCCATCAAGGTGACCTCACGGTGGACATTCCGATGCCCAGGATGCCCTC
AGGCCCTGTCTCATGATGACTCCCACTTCCACGAGCGGCACAAGTGCATCAACTTCTTCGTGAAGGTGTA
CGGCTACATGCCCCTCCTGTACACGCAGTTCAGGGTGGATTCTGTGCTCTTCAAGACACGCCTGCCCCAT
GACAAGACCAAGTGCTTCAAGTTCATCTAG

Translation (919 aa):
MTGYTMLRNGGAGNGGQTCMLRWSNRIRLTWLSFTLFVILVFFPLIAHYYLTTLDEADEAGKRIFGPRVG
NELCEVKHVLDLCRIRESVSEELLQLEAKRQELNSEIAKLNLKIEACKKSIENAKQDLLQLKNVISQTEH
SYKELMAQNQPKLSLPIRLLPEKDDAGLPPPKATRGCRLHNCFDYSRCPLTSGFPVYVYDSDQFVFGSYL
DPLVKQAFQATARANVYVTENADIACLYVILVGEMQEPVVLRPAELEKQLYSLPHWRTDGHNHVIINLSR
KSDTQNLLYNVSTGRAMVAQSTFYTVQYRPGFDLVVSPLVHAMSEPNFMEIPPQVPVKRKYLFTFQGEKI
ESLRSSLQEARSFEEEMEGDPPADYDDRIIATLKAVQDSKLDQVLVEFTCKNQPKPSLPTEWALCGERED
RLELLKLSTFALIITPGDPRLVISSGCATRLFEALEVGAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRV
TEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTADSIFNTVLAMIRTRIQIPAAPIREEAAAEIPHRSGKA
AGTDPNMADNGDLDLGPVETEPPYASPRYLRNFTLTVTDFYRSWNCAPGPFHLFPHTPFDPVLPSEAKFL
GSGTGFRPIGGGAGGSGKEFQAALGGNVPREQFTVVMLTYEREEVLMNSLERLNGLPYLNKVVVVWNSPK
LPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDAHLRHDEIMFGFRVWREARDRIVG
FPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLV
SHITRKPPIKVTSRWTFRCPGCPQALSHDDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRLPH
DKTKCFKFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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