NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16580.1 Public Mus musculus 2 Pak6 23 108 98 CCDS HistoryNCBI Gene:214230Re-query CCDS DB by CCDS ID:16580.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099557.9 ENSMUSP00000097153.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099557.9Link to Ensembl Protein Viewer:ENSMUSP00000097153.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099557Re-query CCDS DB by Protein ID:ENSMUSP00000097153
Original member Current member EBI ENSMUST00000110853.7 ENSMUSP00000106477.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110853.7Link to Ensembl Protein Viewer:ENSMUSP00000106477.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110853Re-query CCDS DB by Protein ID:ENSMUSP00000106477
Original member NCBI NM_001033254.3 NP_001028426.2 Updated not alive Link to Nucleotide Sequence:NM_001033254.3Link to Protein Sequence:NP_001028426.2Re-query CCDS DB by Nucleotide ID:NM_001033254Re-query CCDS DB by Protein ID:NP_001028426
Current member NCBI NM_001033254.4 NP_001028426.2 Accepted alive Link to Nucleotide Sequence:NM_001033254.4Link to Protein Sequence:NP_001028426.2Re-query CCDS DB by Nucleotide ID:NM_001033254Re-query CCDS DB by Protein ID:NP_001028426Link to BLAST:NP_001028426.2
Original member NCBI NM_001145854.1 NP_001139326.1 Updated not alive Link to Nucleotide Sequence:NM_001145854.1Link to Protein Sequence:NP_001139326.1Re-query CCDS DB by Nucleotide ID:NM_001145854Re-query CCDS DB by Protein ID:NP_001139326
Current member NCBI NM_001145854.2 NP_001139326.1 Accepted alive Link to Nucleotide Sequence:NM_001145854.2Link to Protein Sequence:NP_001139326.1Re-query CCDS DB by Nucleotide ID:NM_001145854Re-query CCDS DB by Protein ID:NP_001139326Link to BLAST:NP_001139326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028426.2 682 Q3ULB5 682 100% 0 0
NP_001139326.1 682 Q3ULB5 682 100% 0 0

Chromosomal Locations for CCDS 16580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118688802 118689005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118689734 118690390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118693227 118693724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118693867 118694000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118694294 118694420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118694515 118694640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118695207 118695341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118696407 118696574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGTTCCGCAAGAAAAAGAAGAAACGTCCTGAGATATCAGCCCCGCAGAACTTCCAGCATCGTGTCCACA
CCTCCTTTGACCCCAAGGAAGGCAAGTTTGTGGGTCTGCCCCCACAATGGCAGAACATTCTGGATACTCT
GAGGCGGCCCAAGCCTGTGGTGGATCCTTCTCGAATCACACGGGTGCAGTTGCAGCCCATGAAGACAGTG
GTACGGGGCAGCTCAGTGCCCACGGAGGGCTACATCTCCGGGCTGCTCAACGACATTCAGAAGTTGTCAG
TTATCAGCTCCAACACCCTGCGTGGACGCAGCCCCACCAGCCGGCGGCGGGCACAGTCCCTGGGGCTGCT
GGGAGATGATCAGTGGGCTGCTGACCCCGATATGTACCTCCAAAGCCCCCAGTCGGAGCACACTGATCCC
CATGGCCTCTACCTCAGCTGCAATGGGGGCACACCAGCAGGTCACAGGCAGGTGCCCTGGCCAGAACCAC
AGAGCCCGCAGGCCCTGCCCAATGGGATGGCTGCCAAGGCGCAGTCACTGGGCCCTGCTGAGTTCCAGGG
TGCCTCACAACGCTGCCTGCAGCAGCTGGGTGCCTGCCTGCAGAGTTCCCCACCCGGTACCTCACCCCCT
ATGGCCACAGGGAGGCGTGGGGTGAAGGTTGCCAAGCATAGCTCCGAAGAGGCCCGGCCTCAGTCCTGCC
TGGTGGGCTCCGCCATTGGCAGGCCAGGTGGAGAAGGCAGCCCTAGCCCTAAGAACCAGGAAAGCAGCCT
CAAGCACCGGCTCTTCCGAAGCATGTTCCTGTCCACTCCTGCCACAGGCGCGGCAAGCAGCAGCAAGCCG
GTCCCTCTGCCACAGAACAAGCCCAATTCTGCTTTCCGACCACCACAAAAAGACTCCTCTTCAAACCTGG
TAGCCAAGGCCCAGTCCTTGCCCTCAGAGCAGCCCATGGGGACCTTCAGTCCTCTGACCACCTCAGATAC
CAGCAGCCCCCAGAAGTCCCTCCGCACAGCTCCAGCCGCTGGTCCACTTCCAGGCCGGTCTTCTCCAGCA
GGCTCCCCCCGTACCCGGCATGCTCAGATCAGCACCAGCAATCTCTACCTGCCCCAGGACCCCACAGTGG
CCAAGGGGGCCCTGGGTGGCGAAGACACGGGCATTGTGACCCATGAACAGTTCAAGGCTGCGCTCAGGAT
GGTGGTGGACCAGGGTGACCCTCGGCTGCTGCTGGACAGCTACGTGAAGATTGGGGAGGGCTCCACGGGC
ATTGTGTGTCTGGCCCGGGAGAAGCACTCAGGTCGCCAGGTAGCAGTCAAGATGATGGACCTCAGGAAGC
AGCAACGCAGGGAGCTGCTCTTTAATGAGGTGGTGATCATGCGTGACTACCAGCACCTCAACGTGGTGGA
GATGTACAAGAGTTACCTGGTAGGAGAGGAGCTGTGGGTGTTGATGGAGTTCCTGCAGGGCGGGGCCCTC
ACAGACATCATCTCCCAAGTCAGACTGAATGAGGAGCAGATTGCCACTGTGTGTGAAGCTGTGCTTCAGG
CCTTGGCTTACCTGCACGCCCAGGGTGTCATCCACCGAGATATCAAGAGTGATTCCATCCTGCTGACCCT
TGATGGCAGGGTGAAGCTCTCAGACTTTGGGTTCTGTGCTCAGATCAGCAAAGATGTTCCCAAGAGAAAG
TCCCTGGTAGGAACTCCATACTGGATGGCTCCTGAAGTGATCTCCAGATCCCTGTACGCTACTGAGGTGG
ATATCTGGTCTCTGGGCATCATGGTGATTGAGATGGTGGATGGAGAACCCCCCTACTTCAGTGACTCCCC
AGTGCAAGCCATGAAGAGGCTGCGGGACAGCGCCCCACCCAAGCTAAAGAACTCTTACAAGGTCTCTCCA
GTGCTGCGAGACTTCCTGGATCGGATGCTGGTACGGGAACCCCAAGAGCGAGCCACGGCCCAGGAGCTTC
TGGATCACCCGTTTCTGCTGCAGACGGGGCTGCCTGAGTGTCTGGTGCCTCTGATACAGCTCTACCGCAA
GCAGACCTCCACCTGCTGA

Translation (682 aa):
MFRKKKKKRPEISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILDTLRRPKPVVDPSRITRVQLQPMKTV
VRGSSVPTEGYISGLLNDIQKLSVISSNTLRGRSPTSRRRAQSLGLLGDDQWAADPDMYLQSPQSEHTDP
HGLYLSCNGGTPAGHRQVPWPEPQSPQALPNGMAAKAQSLGPAEFQGASQRCLQQLGACLQSSPPGTSPP
MATGRRGVKVAKHSSEEARPQSCLVGSAIGRPGGEGSPSPKNQESSLKHRLFRSMFLSTPATGAASSSKP
VPLPQNKPNSAFRPPQKDSSSNLVAKAQSLPSEQPMGTFSPLTTSDTSSPQKSLRTAPAAGPLPGRSSPA
GSPRTRHAQISTSNLYLPQDPTVAKGALGGEDTGIVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTG
IVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHLNVVEMYKSYLVGEELWVLMEFLQGGAL
TDIISQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRK
SLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSAPPKLKNSYKVSP
VLRDFLDRMLVREPQERATAQELLDHPFLLQTGLPECLVPLIQLYRKQTSTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH