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Report for CCDS23286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23286.1 Public Mus musculus 9 Parp16 23 108 98 CCDS HistoryNCBI Gene:214424Re-query CCDS DB by CCDS ID:23286.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069000.8 ENSMUSP00000070098.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069000.8Link to Ensembl Protein Viewer:ENSMUSP00000070098.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069000Re-query CCDS DB by Protein ID:ENSMUSP00000070098
Original member Current member EBI ENSMUST00000216702.1 ENSMUSP00000149927.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216702.1Link to Ensembl Protein Viewer:ENSMUSP00000149927.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216702Re-query CCDS DB by Protein ID:ENSMUSP00000149927
Original member Current member EBI ENSMUST00000213396.1 ENSMUSP00000150318.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213396.1Link to Ensembl Protein Viewer:ENSMUSP00000150318.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213396Re-query CCDS DB by Protein ID:ENSMUSP00000150318
Original member Current member NCBI NM_177460.4 NP_803411.3 Accepted alive Link to Nucleotide Sequence:NM_177460.4Link to Protein Sequence:NP_803411.3Re-query CCDS DB by Nucleotide ID:NM_177460Re-query CCDS DB by Protein ID:NP_803411Link to BLAST:NP_803411.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803411.3 322 Q7TMM8 322 100% 0 0

Chromosomal Locations for CCDS 23286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65215459 65215632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65226053 65226190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65229806 65230012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65233669 65233840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65236641 65236782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65237854 65237989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGCAGCTCTCCAACAGGGCAGCAGCCAGGGAGGCAGCGAGCCGCGACGTGCTGGCTGCGGACCTCCGCT
GCAGCCTCTTCGCCTCGGCGCTGCAGAGCTACAAGCGGGACTCGGTGCTGCGGCCCTTCCCCGCCTCCTA
CGCCCGCCACGACTGTAAGGACTTCGAGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAA
CTTCTACAGTCTTCCAGAGACACAGACAAACAGGCCTGGGACCTGGTGAGCTGGATTTTATCCTCCAAGA
TCCTGACAATCCACAGTGCCAAGAAGGCAGAGTTTGAAAAGATCCAGCAGCTGACCGGCGCCCCTCACAC
ACCTGTCCCCACCCCGGATTTCCTATTTGAAATTGAGTACTTTGACCCGGCCAACTCCAGATTTTATGAG
ACCAAAGGAGAACGAGACCTAATCTATGCCTTCCATGGTAGCCGCCTAGAGAACTTCCACTCCATCATTC
ACAATGGCCTGCACTGCCACCTGAACAAGACTTCTCTGTTTGGAGAGGGGACCTACCTCACAAGTGACTT
GAGCCTGGCCCTCATTTATAGTCCTCATGGCCACGGGTGGCAACATAGCCTTCTTGGCCCGATCCTGAGC
TGCGTAGCTGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAAATCAAGAAGAAGGATTCCAAGG
AAATAGACCGCAGCCGAGCAAGAATCAAGCACAGCGAGGGGGGAGAGATCCCCCCTAAGTACTTTGTAGT
CACCAATAACCAGCTTCTGCGGGTGAAGTACCTGCTGGTGTATTCCCAGAAGCAGCCCAAGAGGGCCTCG
AGCCAGCTCTCCTGGTTGTCCAGCCACTGGTTCGTGATCATGATGTCCCTGTATCTGCTGCTGCTGCTCA
TCGTGAGTGTCACCAACTCCTCTGTGTTCCACCACTTCTGGAATCGTGTGAAGAGATGA

Translation (322 aa):
MQLSNRAAAREAASRDVLAADLRCSLFASALQSYKRDSVLRPFPASYARHDCKDFEALLADTGRLPNLKE
LLQSSRDTDKQAWDLVSWILSSKILTIHSAKKAEFEKIQQLTGAPHTPVPTPDFLFEIEYFDPANSRFYE
TKGERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILS
CVAVCEVIDHPDVKCQIKKKDSKEIDRSRARIKHSEGGEIPPKYFVVTNNQLLRVKYLLVYSQKQPKRAS
SQLSWLSSHWFVIMMSLYLLLLLIVSVTNSSVFHHFWNRVKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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