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Report for CCDS37674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37674.1 Public Mus musculus 17 Pja2 23 108 98 CCDS HistoryNCBI Gene:224938Re-query CCDS DB by CCDS ID:37674.1Re-query CCDS DB by GeneID:224938See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024889.13 ENSMUSP00000024889.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024889.13Link to Ensembl Protein Viewer:ENSMUSP00000024889.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024889Re-query CCDS DB by Protein ID:ENSMUSP00000024889
Original member Current member EBI ENSMUST00000172733.1 ENSMUSP00000133730.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172733.1Link to Ensembl Protein Viewer:ENSMUSP00000133730.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172733Re-query CCDS DB by Protein ID:ENSMUSP00000133730
Original member Current member NCBI NM_144859.2 NP_659108.1 Accepted alive Link to Nucleotide Sequence:NM_144859.2Link to Protein Sequence:NP_659108.1Re-query CCDS DB by Nucleotide ID:NM_144859Re-query CCDS DB by Protein ID:NP_659108Link to BLAST:NP_659108.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659108.1 645 Q80U04-2 645 100% 0 0

Chromosomal Locations for CCDS 37674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 64283413 64283538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64287001 64287122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64287528 64287642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64289933 64290044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64292839 64293024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64308622 64309666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64311171 64311371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64313001 64313031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGTCACAGTACACTGAAAAAGAGCCATCAGTAATGGATCAAGAATCCAGCAAGGCTGCTTGGCCTAAAC
CAGCAGGAGGATATCAGACTATCACAGGCAGGAGATATGGAAGAAGACATGCGTATGTCAGTTTTAAGCC
ATGTATGACCAGGCATGAAAGAAGCTTGGGTCGGGCTGGTGATGACTATGAAGTGTTGGAACTAGACGAT
GTTCCAAAGGAGAACACCTCAGGTTCCAGTTCATTGGATCAAGTCCATCCTGCTTTACCAAATGAACCTA
CAGTTGAAAAAAGTGAAACAGAAATTTCTACTTGTGGTCCAGCACTGAATCAAAGCACTGAGAGCAGTCC
ATCCATTGCCACAGTATGTCATAGTGAGGAAGTCAGGGAGACCTTAGAAAGCAATACAAACCTTCATAAT
CGCACTGAGACAGAGCATACTCCAGCAGTTTGTAATGTCTCAAGTGTCCAGAATGGAATTATGTTGGTTC
ATACTGACTCTTATGATCCAGACAGCAAGCATGATGAGAATGGCTCTCTTCAACTTGGCGCTGAAGCTGT
GGAAGGTGGTAGACATCAGAAGGGGTTAGGCCGTGCAGTCTTTGAGCTGGAAAATGGAGAGGCAGAGATC
TACGCTGACCTGTCACCATCAGTCCCCTCTCTCAACGGTGAAATAAGTGAGGCGTTTGAAGAGCTAGATT
CAGCACCTTTAGAGAAAAGTTCTACTGCCGATGCTGAGCTTGTCCATCAGAATGGGCAGGAATTTCAGAG
GTCTTCTGAAGATGGCGTTGTTAGAAAGAGGCGACAAGACGATACTGATCAGGGAAGACAGACAGAAAAT
TCAACTGAAGATGCAGACTGTGCTCCAGGCCATGTTGAGCAAAATACTAGTGATAGAGCCAACCACCATG
GAAGTTCTCCTGAACAGGTAGTAAGGCCCAAAGTTAGAAAAGTGATAAGTTCAAGCCAGGTGGACCAAGA
AATTGGTTTTAATAGGCACGAGGCTAAGCAGAGAAGCGTTCAGAGATGGAGAGAGGCTTTGGAAGTGGAG
GAGTGCAGTTCAGATGACCCTATAATAAAGTGTGACGATTATGATGGAGACCACGACTGCATGTTCCTAA
CTCCAACTTACTCAAGAGTTACACAAAGGGAGACAGAACGGAATCGTGTAACATCAGAAAATGGAGCTAC
AGCTTCAGGACGGCAAGAATCTCGGGACAATGCCTTTTGGAATGCCTGCGGAGAGTATTACCAACTCTTT
GACAAAGATGAAGACAGGGAACAGACATCCTTGGAAGAGGGAGAGATCCCTTGGTTACAGTACAATGAGG
TCAATGAGAGCAGCAGCGATGAAGGGAATGAGCCTGCCAATGAGTTTGCACAGCCGGAAGCTTTCATGTT
GGATGGGAACAACAACCTTGAGGACGACTCGAGCGTGAGTGAAGACTTGGATGTGGACTGGAGCCTGTTT
GATGGTTTTGCAGACGGACTTGGAGTTGCTGAAGCTATTTCTTATGTGGATCCTCAGTTCCTTACCTACA
TGGCACTAGAAGAGCGCTTAGCCCAGGCTATGGAGACTGCGCTGGCACATTTAGAGTCCCTTGCAGTAGA
CGTTGAGGTGGCCAATCCACCTGCCAGTAAGGAAAGCATTGATGGGCTTCCAGAGACTCTGGTTCTAGAG
GACCACACCGCCATCGGCCAGGAGCAGTGCTGTCCCATCTGCTGCAGCGAGTACATCAAGGATGACATTG
CCACAGAGCTGCCTTGCCATCACTTCTTTCATAAGCCCTGTGTCTCCATCTGGCTACAGAAGTCCGGAAC
ATGCCCTGTGTGCCGCCGTCACTTCCCACCTGCAGTTATTGACGCATCTGCAGCTGCTTCCTCTGACCCT
GACCCTGATGCCTCGCCTGCAAATGACAATGCTGAAGAAGCCCCATAA

Translation (645 aa):
MSQYTEKEPSVMDQESSKAAWPKPAGGYQTITGRRYGRRHAYVSFKPCMTRHERSLGRAGDDYEVLELDD
VPKENTSGSSSLDQVHPALPNEPTVEKSETEISTCGPALNQSTESSPSIATVCHSEEVRETLESNTNLHN
RTETEHTPAVCNVSSVQNGIMLVHTDSYDPDSKHDENGSLQLGAEAVEGGRHQKGLGRAVFELENGEAEI
YADLSPSVPSLNGEISEAFEELDSAPLEKSSTADAELVHQNGQEFQRSSEDGVVRKRRQDDTDQGRQTEN
STEDADCAPGHVEQNTSDRANHHGSSPEQVVRPKVRKVISSSQVDQEIGFNRHEAKQRSVQRWREALEVE
ECSSDDPIIKCDDYDGDHDCMFLTPTYSRVTQRETERNRVTSENGATASGRQESRDNAFWNACGEYYQLF
DKDEDREQTSLEEGEIPWLQYNEVNESSSDEGNEPANEFAQPEAFMLDGNNNLEDDSSVSEDLDVDWSLF
DGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLE
DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSDP
DPDASPANDNAEEAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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