NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5668.1 Public Homo sapiens 7 FAM200A 24 110 108 CCDS HistoryNCBI Gene:221786Re-query CCDS DB by CCDS ID:5668.1Re-query CCDS DB by GeneID:221786See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5668.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449309.2 ENSP00000411372.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000449309.2Link to Ensembl Protein Viewer:ENSP00000411372.1Re-query CCDS DB by Nucleotide ID:ENST00000449309Re-query CCDS DB by Protein ID:ENSP00000411372
Original member Current member NCBI NM_145111.4 NP_659802.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145111.4Link to Protein Sequence:NP_659802.1Re-query CCDS DB by Nucleotide ID:NM_145111Re-query CCDS DB by Protein ID:NP_659802Link to BLAST:NP_659802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659802.1 573 Q8TCP9 573 100% 0 0

Chromosomal Locations for CCDS 5668.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99546686 99548407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGACTCCTGAATCAAGGGATACTACAGATTTGTCTCCAGGGGGTACCCAGGAGATGGAAGGCATCGTGA
TAGTGAAGGTGGAGGAGGAAGATGAAGAAGACCATTTTCAAAAGGAAAGAAACAAAGTAGAGTCATCGCC
ACAAGTTCTCAGTCGCTCTACAACTATGAATGAGAGAGCCTTATTGTCATCGTATTTAGTTGCATATAGA
GTGGCAAAAGAGAAAATGGCTCACACAGCGGCTGAAAAAATTATCCTTCCAGCATGTATGGACATGGTAC
GGACAATTTTTGATGACAAATCAGCTGATAAACTAAGAACTATACCTCTTAGTGATAATACAATATCTCG
TCGAATCTGTACGATTGCAAAACATTTGGAAGCAATGCTTATTACACGGCTGCAGTCCGGTATAGACTTT
GCAATCCAACTCGATGAGAGCACTGATATTGCAAGTTGTCCCACACTCTTGGTTTATGTCAGATATGTGT
GGCAAGATGATTTTGTAGAGGATCTCTTATGTTGTTTAAATTTAAATTCACATATAACTGGATTAGATTT
ATTTACTGAATTAGAAAACTGCCTTCTTGGTCAGTATAAATTAAACTGGAAACATTGTAAAGGAATTTCA
AGTGATGGAACAGCAAATATGACCGGAAAACACAGCAGACTTACTGAAAAATTGTTAGAAGCAACCCACA
ACAATGCTGTTTGGAATCACTGTTTTATTCATCGAGAAGCTTTGGTATCCAAAGAAATTTCACCAAGTCT
GATGGATGTATTGAAAAATGCAGTGAAAACTGTTAATTTTATTAAAGGAAGCTCACTGAATAGCCGACTT
CTCGAAATATTTTGTTCAGAGATTGGAGTGAACCACACCCACTTATTGTTTCATACAGAAGTTCGTTGGC
TTTCTCAAGGAAAAGTATTGAGCAGAGTATATGAACTCAGGAACGAGATTTACATTTTTCTCGTTGAAAA
GCAATCTCATTTGGCAAATATTTTTGAAGACGACATTTGGGTAACAAAATTGGCATATTTAAGTGATATT
TTTGGCATTCTTAATGAATTAAGCCTGAAAATGCAGGGGAAAAACAATGATATATTTCAGTATCTTGAAC
ATATTCTAGGATTCCAAAAGACGTTATTATTGTGGCAAGCAAGACTTAAAAGTAACCGCCCTAGCTACTA
TATGTTTCCAACATTATTGCAACACATCGAAGAGAACATTATTAATGAAGACTGCTTAAAAGAAATAAAA
TTAGAGATATTGTTGCATCTCACTTCTTTGTCTCAAACTTTTAATTATTACTTTCCGGAAGAGAAATTTG
AATCATTAAAGGAAAATATTTGGATGAAAGATCCATTTGCTTTTCAAAACCCAGAATCAATAATTGAGTT
AAACTTGGAGCCTGAAGAAGAGAATGAATTATTGCAGCTCAGTTCATCATTCACACTAAAGAATTATTAT
AAGATATTAAGTTTATCAGCATTTTGGATTAAGATTAAAGATGACTTTCCACTGCTAAGTAGGAAGAGTA
TATTGCTGTTACTACCATTCACAACTACATATTTGTGTGAACTAGGATTTTCAATCTTGACACGGTTAAA
AACAAAGAAGAGAAATAGGCTCAATAGTGCACCAGATATGCGGGTAGCATTATCTTCATGTGTTCCTGAC
TGGAAGGAACTTATGAACAGACAAGCACACCCATCACATTAA

Translation (573 aa):
MTPESRDTTDLSPGGTQEMEGIVIVKVEEEDEEDHFQKERNKVESSPQVLSRSTTMNERALLSSYLVAYR
VAKEKMAHTAAEKIILPACMDMVRTIFDDKSADKLRTIPLSDNTISRRICTIAKHLEAMLITRLQSGIDF
AIQLDESTDIASCPTLLVYVRYVWQDDFVEDLLCCLNLNSHITGLDLFTELENCLLGQYKLNWKHCKGIS
SDGTANMTGKHSRLTEKLLEATHNNAVWNHCFIHREALVSKEISPSLMDVLKNAVKTVNFIKGSSLNSRL
LEIFCSEIGVNHTHLLFHTEVRWLSQGKVLSRVYELRNEIYIFLVEKQSHLANIFEDDIWVTKLAYLSDI
FGILNELSLKMQGKNNDIFQYLEHILGFQKTLLLWQARLKSNRPSYYMFPTLLQHIEENIINEDCLKEIK
LEILLHLTSLSQTFNYYFPEEKFESLKENIWMKDPFAFQNPESIIELNLEPEEENELLQLSSSFTLKNYY
KILSLSAFWIKIKDDFPLLSRKSILLLLPFTTTYLCELGFSILTRLKTKKRNRLNSAPDMRVALSSCVPD
WKELMNRQAHPSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH