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Report for CCDS45392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45392.1 Public Homo sapiens 16 THOC6 24 110 108 CCDS HistoryNCBI Gene:79228Re-query CCDS DB by CCDS ID:45392.1Re-query CCDS DB by GeneID:79228See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253952.9 ENSP00000253952.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000253952.9Link to Ensembl Protein Viewer:ENSP00000253952.9Re-query CCDS DB by Nucleotide ID:ENST00000253952Re-query CCDS DB by Protein ID:ENSP00000253952
Original member Current member NCBI NM_001142350.3 NP_001135822.1 Accepted alive Link to Nucleotide Sequence:NM_001142350.3Link to Protein Sequence:NP_001135822.1Re-query CCDS DB by Nucleotide ID:NM_001142350Re-query CCDS DB by Protein ID:NP_001135822Link to BLAST:NP_001135822.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135822.1 296 Q86W42-3 296 100% 0 0

Chromosomal Locations for CCDS 45392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3024327 3024365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3025708 3025823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3025924 3025988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3026063 3026166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3026251 3026288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3026365 3026413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3026516 3026587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3026679 3026781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3026867 3026916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3027011 3027073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3027170 3027280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3027577 3027657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGAGCGAGCTGTGCCGCTCGCGGTGCCTCTGGGTCAGACAGAGGTGTTCCAGGCCTTGCAGCGGCTCC
ATATGACCATCTTCTCCCAGAGCGTCTCACCATGTGGGAAGTTTCTGGCGGCTGGCAACAATTACGGGCA
GATTGCCATCTTCAGCTTGTCCTCTGCTTTGAGCTCAGAAGCCAAAGAGGAAAGTAAGAAGCCGGTGGTG
ACTTTCCAAGCCCATGATGGGCCCGTCTATAGCATGGTTTCCACCGATCGACATCTGCTTAGTGCTGGGG
ATGGGGAGGTGAAGGCCTGGCTTTGGGCGGAGATGCTCAAGAAGGGCTGTAAGGAGCTGTGGCGTCGTCA
GCCTCCATACAGGACCAGCCTGGAAGTGCCTGAGATCAACGCTTTGCTGCTGGTCCCCAAGGAGAATTCC
CTCATCCTGGCTGGGGGAGACTGTCAGTTGCACACTATGGACCTTGAAACTGGGACTTTCACGAGGGTCC
TCCGGGGCCACACAGACTACATCCACTGCCTGGCACTGCGGGAAAGGAGCCCAGAGGTGCTGTCAGGTGG
CGAGGATGGAGCTGTTCGACTTTGGGACCTGCGCACAGCCAAGGAGGTCCAGACGATCGAGGTCTATAAG
CACGAGGAGTGCTCGAGGCCCCACAATGGGCGCTGGATTGGATGTTTGGCAACTGATTCCGACTGGATGG
TCTGTGGAGGGGGCCCAGCCCTCACCCTCTGGCACCTCCGATCCTCCACACCCACCACCATCTTCCCCAT
CCGGGCGCCACAGAAGCACGTCACCTTCTACCAGGACCTGGTCCTGACAGCTGCAGGCAACAGCTGCCGG
GTGGATGTCTTCACCAACCTGGGTTACCGAGCCTTCTCCCTGTCCTTCTGA

Translation (296 aa):
MERAVPLAVPLGQTEVFQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVV
TFQAHDGPVYSMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPEINALLLVPKENS
LILAGGDCQLHTMDLETGTFTRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYK
HEECSRPHNGRWIGCLATDSDWMVCGGGPALTLWHLRSSTPTTIFPIRAPQKHVTFYQDLVLTAAGNSCR
VDVFTNLGYRAFSLSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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