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Report for CCDS3852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3852.1 Public Homo sapiens 5 CCDC127 24 110 108 CCDS HistoryNCBI Gene:133957Re-query CCDS DB by CCDS ID:3852.1Re-query CCDS DB by GeneID:133957See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296824.4 ENSP00000296824.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296824.4Link to Ensembl Protein Viewer:ENSP00000296824.2Re-query CCDS DB by Nucleotide ID:ENST00000296824Re-query CCDS DB by Protein ID:ENSP00000296824
Original member Current member NCBI NM_145265.3 NP_660308.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145265.3Link to Protein Sequence:NP_660308.1Re-query CCDS DB by Nucleotide ID:NM_145265Re-query CCDS DB by Protein ID:NP_660308Link to BLAST:NP_660308.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660308.1 260 Q96BQ5 260 100% 0 0

Chromosomal Locations for CCDS 3852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 205297 205958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 216729 216849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGAATAACCTAAATGATCCCCCAAATTGGAATATCCGGCCTAATTCCAGGGCGGATGGTGGTGATGGAA
GCAGGTGGAATTATGCCCTGTTGGTTCCAATGCTGGGATTGGCTGCTTTTCGTTGGATTTGGTCTAGGGA
GTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTG
GAAGCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAA
AGGAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAA
GAAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAAAAAAGACAGGTGCAGCCTTTGAGAAGTGCG
TATTTGAGCTGCCTGCAAAGGGAAGAAAACTGGCAAAGGAGAGCCAGGCTTTTGCTGAAAGAATTTGAAG
CTGTTCTCACAGAAAGACAGAATATCTACTGCAGTCTGTTTCTTCCTCGCAGCAAGCGGCTGGAGATAGA
GAAGAGCTTACTGGTGCGAGCGTCCGTCGACCCCGTCGCCGCTGACCTAGAGATGGCAGCCGGTCTCACC
GACATATTTCAGCATGATACATACTGTGGTGATGTCTGGAACACCAACAAACGCCAGAATGGCAGACTCA
TGTGGCTCTATCTCAAATACTGGGAACTCGTTGTCGAACTGAAGAAGTTTAAGAGAGTAGAGGAAGCCAT
ACTAGAAAAGTAA

Translation (260 aa):
MNNLNDPPNWNIRPNSRADGGDGSRWNYALLVPMLGLAAFRWIWSRESQKEVEKEREAYRRRTAAFQQDL
EAKYHAMISENRRAVAQLSLELEKEQNRTASYREALISQGRKLVEEKKLLEQERAQVMQEKRQVQPLRSA
YLSCLQREENWQRRARLLLKEFEAVLTERQNIYCSLFLPRSKRLEIEKSLLVRASVDPVAADLEMAAGLT
DIFQHDTYCGDVWNTNKRQNGRLMWLYLKYWELVVELKKFKRVEEAILEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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