NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5816.1 Public Homo sapiens 7 SSMEM1 24 110 108 CCDS HistoryNCBI Gene:136263Re-query CCDS DB by CCDS ID:5816.1Re-query CCDS DB by GeneID:136263See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297819.4 ENSP00000297819.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297819.4Link to Ensembl Protein Viewer:ENSP00000297819.3Re-query CCDS DB by Nucleotide ID:ENST00000297819Re-query CCDS DB by Protein ID:ENSP00000297819
Original member Current member NCBI NM_145268.4 NP_660311.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145268.4Link to Protein Sequence:NP_660311.1Re-query CCDS DB by Nucleotide ID:NM_145268Re-query CCDS DB by Protein ID:NP_660311Link to BLAST:NP_660311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660311.1 244 Q8WWF3 244 100% 0 0

Chromosomal Locations for CCDS 5816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130207911 130208093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130213480 130213534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130215974 130216470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGGAGACCTTTTTTCCTTATTTTGGGAGGTAGATCCTCCCCCAATACCTGTAAATTGTGCCATTCCAA
ATCAGGATTATGAATGCTGGAAGGATGACTCTTGTGGAACCATAGGGAGCTTCCTGCTTTGGTATTTTGT
TATCGTATTTGTCCTGATGTTCTTCTCTAGGGCTTCTGTCTGGATGTCTGAGGATAAAAAGGATGAAGGC
AGTGGGACAAGTACTTCAGTAAGGAAAGCAAGCAAAGAGACTTCCTGTAAGCGGCAAAGCAAAGACAGTG
CCTGGGATCCCTCACAAACAATGAAGAAACCAAAGCAGAACCAACTTACCCCTGTAACCAACTCAGAAGT
GGCTTTGGTCAATGCCTATCCTGAACAAAGACGAGCCAGGCGCCAGTCTCAGTTCAATGAGGTGAACCAG
AACCAACATGACAGTGATACTACGGAGTATGGCAGTGAAGAGTCTAACTCAGAAGCCTCCTCGTGGAAGG
AGAGTGAAAGTGAACACCACCCATCACCAGACAGTATTAAGAGGAGAAAAATGGCTCAGAGGCAAAGGAA
TCTGGGAAGTTACCAAATGAGCGAAAGGCACTGCCTCCACTGCAAAGCCTTGAGAACCAACGAATGGTTG
GCGCACCATTCCCGACAGAAGCCTTCAGTAACACCGCCAATGAAAAGAGACAGTCAAGAGGAAAGTTCCA
TATCTGACATTAACAAGAAATTTAGTAAATTTTGA

Translation (244 aa):
MGDLFSLFWEVDPPPIPVNCAIPNQDYECWKDDSCGTIGSFLLWYFVIVFVLMFFSRASVWMSEDKKDEG
SGTSTSVRKASKETSCKRQSKDSAWDPSQTMKKPKQNQLTPVTNSEVALVNAYPEQRRARRQSQFNEVNQ
NQHDSDTTEYGSEESNSEASSWKESESEHHPSPDSIKRRKMAQRQRNLGSYQMSERHCLHCKALRTNEWL
AHHSRQKPSVTPPMKRDSQEESSISDINKKFSKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH