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Report for CCDS26445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26445.1 Public Mus musculus 13 Tubb2b 23 108 98 CCDS HistoryNCBI Gene:73710Re-query CCDS DB by CCDS ID:26445.1Re-query CCDS DB by GeneID:73710See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075774.4 ENSMUSP00000075178.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075774.4Link to Ensembl Protein Viewer:ENSMUSP00000075178.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075774Re-query CCDS DB by Protein ID:ENSMUSP00000075178
Original member Current member NCBI NM_023716.2 NP_076205.1 Accepted alive Link to Nucleotide Sequence:NM_023716.2Link to Protein Sequence:NP_076205.1Re-query CCDS DB by Nucleotide ID:NM_023716Re-query CCDS DB by Protein ID:NP_076205Link to BLAST:NP_076205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076205.1 445 Q9CWF2 445 100% 0 0

Chromosomal Locations for CCDS 26445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 34127471 34128531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34128872 34128982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34129246 34129354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34130177 34130233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGCGAGAGATCGTGCACATTCAGGCGGGCCAGTGCGGCAACCAGATCGGTGCCAAGTTTTGGGAGGTCA
TC
AGTGATGAGCATGGTATAGACCCCACTGGAAGTTACCATGGAGACAGTGATTTGCAACTGGAAAGAAT
C
AATGTATACTACAATGAAGCAACTGGTAATAAATATGTGCCTAGGGCCATCCTGGTGGACCTGGAGCCA
GGC
ACAATGGACTCAGTCAGGTCTGGACCATTTGGGCAGATCTTCAGGCCGGACAACTTCGTGTTCGGCC
AG
AGTGGTGCAGGAAATAACTGGGCAAAGGGCCACTACACAGAGGGGGCCGAGCTGGTGGACTCTGTCCT
G
GACGTGGTGAGGAAGGAGTCAGAAAGCTGTGACTGTCTTCAGGGCTTCCAGCTGACCCACTCACTGGGG
GGA
GGCACTGGCTCAGGCATGGGGACCCTGCTCATCAGCAAGATCAGAGAGGAGTACCCAGACCGCATCA
TG
AACACCTTCAGCGTCATGCCCTCACCCAAGGTCTCTGACACTGTGGTGGAGCCCTATAATGCCACCCT
C
TCAGTGCACCAGCTGGTAGAGAACACAGATGAAACCTACTGCATCGATAATGAGGCTCTGTATGACATC
TGT
TTCCGCACCCTGAAGCTGACCACACCCACCTATGGCGATCTCAACCACCTGGTGTCAGCCACCATGA
GT
GGAGTGACCACCTGCCTGCGCTTCCCAGGCCAGCTGAACGCAGACCTGCGCAAGCTGGCCGTGAACAT
G
GTGCCATTCCCACGCCTGCACTTCTTCATGCCAGGCTTTGCACCTCTGACCAGCCGGGGCAGCCAGCAG
TAC
CGAGCCCTGACGGTGCCCGAGCTGACCCAGCAGATGTTCGACTCCAAGAACATGATGGCTGCCTGCG
AC
CCTCGCCATGGCCGCTACCTGACCGTGGCCGCCATTTTCCGTGGCCGCATGTCCATGAAGGAGGTGGA
T
GAGCAGATGCTCAACGTGCAGAACAAGAACAGCAGCTACTTCGTGGAGTGGATCCCCAACAACGTCAAG
ACG
GCCGTGTGTGACATCCCTCCTCGTGGCCTCAAGATGTCAGCCACCTTCATTGGCAACAGCACTGCCA
TC
CAGGAGCTGTTCAAGCGCATCTCGGAGCAGTTCACTGCTATGTTCCGGCGCAAGGCTTTCCTGCACTG
G
TACACGGGTGAGGGCATGGACGAGATGGAGTTCACCGAGGCGGAGAGCAACATGAATGACCTGGTGTCT
GAG
TACCAGCAGTACCAGGATGCCACGGCTGATGAGCAGGGCGAGTTCGAGGAGGAAGAGGGCGAGGATG
AG
GCTTGA


Translation (445 aa):
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEP
G
TMDSVRSGPFGQIFRPDNFVF
GQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLG
G
GTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
C
FRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ
Y
RALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVK
T
AVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
E
YQQYQDATADEQGEFEEEEGEDEA




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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