NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34681.1 Public Homo sapiens 7 SAMD9L 24 110 108 CCDS HistoryNCBI Gene:219285Re-query CCDS DB by CCDS ID:34681.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34681.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318238.9 ENSP00000326247.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318238.9Link to Ensembl Protein Viewer:ENSP00000326247.4Re-query CCDS DB by Nucleotide ID:ENST00000318238Re-query CCDS DB by Protein ID:ENSP00000326247
Original member Current member EBI ENST00000439952.6 ENSP00000391387.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439952.6Link to Ensembl Protein Viewer:ENSP00000391387.2Re-query CCDS DB by Nucleotide ID:ENST00000439952Re-query CCDS DB by Protein ID:ENSP00000391387
Original member Current member EBI ENST00000446959.6 ENSP00000391699.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446959.6Link to Ensembl Protein Viewer:ENSP00000391699.2Re-query CCDS DB by Nucleotide ID:ENST00000446959Re-query CCDS DB by Protein ID:ENSP00000391699
Original member Current member EBI ENST00000414791.6 ENSP00000396137.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414791.6Link to Ensembl Protein Viewer:ENSP00000396137.2Re-query CCDS DB by Nucleotide ID:ENST00000414791Re-query CCDS DB by Protein ID:ENSP00000396137
Original member Current member EBI ENST00000411955.5 ENSP00000405760.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411955.5Link to Ensembl Protein Viewer:ENSP00000405760.1Re-query CCDS DB by Nucleotide ID:ENST00000411955Re-query CCDS DB by Protein ID:ENSP00000405760
Original member Current member EBI ENST00000437805.5 ENSP00000408796.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437805.5Link to Ensembl Protein Viewer:ENSP00000408796.1Re-query CCDS DB by Nucleotide ID:ENST00000437805Re-query CCDS DB by Protein ID:ENSP00000408796
Original member Current member EBI ENST00000446033.2 ENSP00000410062.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446033.2Link to Ensembl Protein Viewer:ENSP00000410062.2Re-query CCDS DB by Nucleotide ID:ENST00000446033Re-query CCDS DB by Protein ID:ENSP00000410062
Original member Current member EBI ENST00000699641.1 ENSP00000514494.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699641.1Link to Ensembl Protein Viewer:ENSP00000514494.1Re-query CCDS DB by Nucleotide ID:ENST00000699641Re-query CCDS DB by Protein ID:ENSP00000514494
Original member Current member NCBI NM_001303496.3 NP_001290425.1 Accepted alive Link to Nucleotide Sequence:NM_001303496.3Link to Protein Sequence:NP_001290425.1Re-query CCDS DB by Nucleotide ID:NM_001303496Re-query CCDS DB by Protein ID:NP_001290425Link to BLAST:NP_001290425.1
Original member Current member NCBI NM_001303497.3 NP_001290426.1 Accepted alive Link to Nucleotide Sequence:NM_001303497.3Link to Protein Sequence:NP_001290426.1Re-query CCDS DB by Nucleotide ID:NM_001303497Re-query CCDS DB by Protein ID:NP_001290426Link to BLAST:NP_001290426.1
Original member Current member NCBI NM_001303498.3 NP_001290427.1 Accepted alive Link to Nucleotide Sequence:NM_001303498.3Link to Protein Sequence:NP_001290427.1Re-query CCDS DB by Nucleotide ID:NM_001303498Re-query CCDS DB by Protein ID:NP_001290427Link to BLAST:NP_001290427.1
Original member Current member NCBI NM_001303500.3 NP_001290429.1 Accepted alive Link to Nucleotide Sequence:NM_001303500.3Link to Protein Sequence:NP_001290429.1Re-query CCDS DB by Nucleotide ID:NM_001303500Re-query CCDS DB by Protein ID:NP_001290429Link to BLAST:NP_001290429.1
Original member Current member NCBI NM_001350082.2 NP_001337011.1 Accepted alive Link to Nucleotide Sequence:NM_001350082.2Link to Protein Sequence:NP_001337011.1Re-query CCDS DB by Nucleotide ID:NM_001350082Re-query CCDS DB by Protein ID:NP_001337011Link to BLAST:NP_001337011.1
Original member Current member NCBI NM_001350083.2 NP_001337012.1 Accepted alive Link to Nucleotide Sequence:NM_001350083.2Link to Protein Sequence:NP_001337012.1Re-query CCDS DB by Nucleotide ID:NM_001350083Re-query CCDS DB by Protein ID:NP_001337012Link to BLAST:NP_001337012.1
Original member Current member NCBI NM_001350084.2 NP_001337013.1 Accepted alive Link to Nucleotide Sequence:NM_001350084.2Link to Protein Sequence:NP_001337013.1Re-query CCDS DB by Nucleotide ID:NM_001350084Re-query CCDS DB by Protein ID:NP_001337013Link to BLAST:NP_001337013.1
Original member Current member NCBI NM_001350085.2 NP_001337014.1 Accepted alive Link to Nucleotide Sequence:NM_001350085.2Link to Protein Sequence:NP_001337014.1Re-query CCDS DB by Nucleotide ID:NM_001350085Re-query CCDS DB by Protein ID:NP_001337014Link to BLAST:NP_001337014.1
Original member Current member NCBI NM_152703.5 NP_689916.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152703.5Link to Protein Sequence:NP_689916.2Re-query CCDS DB by Nucleotide ID:NM_152703Re-query CCDS DB by Protein ID:NP_689916Link to BLAST:NP_689916.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290425.1 1584 Q8IVG5-1 1584 100% 0 0
NP_001290426.1 1584 Q8IVG5-1 1584 100% 0 0
NP_001290427.1 1584 Q8IVG5-1 1584 100% 0 0
NP_001290429.1 1584 Q8IVG5-1 1584 100% 0 0
NP_001337011.1 1584 Q8IVG5-1 1584 100% 0 0
NP_001337012.1 1584 Q8IVG5-1 1584 100% 0 0
NP_001337013.1 1584 Q8IVG5-1 1584 100% 0 0
NP_001337014.1 1584 Q8IVG5-1 1584 100% 0 0
NP_689916.2 1584 Q8IVG5-1 1584 100% 0 0

Chromosomal Locations for CCDS 34681.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 93131217 93135971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4755 nt):
ATGAGTAAACAAGTATCTCTACCTGAAATGATTAAAGACTGGACCAAAGAGCATGTGAAAAAATGGGTAA
ATGAAGACCTTAAGATTAATGAGCAATACGGGCAAATTCTGCTCAGTGAAGAAGTAACAGGATTAGTCCT
GCAGGAATTAACTGAGAAGGACCTTGTAGAAATGGGGCTACCATGGGGTCCAGCACTTTTGATAAAACGT
TCATACAACAAATTGAATAGTAAGTCCCCTGAAAGTGACAATCATGATCCGGGACAATTAGATAATTCAA
AACCGTCCAAAACAGAACACCAGAAAAATCCAAAACACACCAAAAAGGAAGAAGAAAATTCAATGTCATC
TAATATTGATTATGATCCCAGAGAGATCAGAGATATCAAACAAGAAGAATCAATTCTTATGAAAGAAAAT
GTGTTAGATGAAGTAGCAAATGCTAAACACAAGAAAAAGGGTAAGCTAAAACCTGAACAATTGACTTGTA
TGCCATATCCTTTTGATCAGTTCCATGACAGCCATCGCTACATAGAACATTATACTCTACAACCTGAAAC
AGGAGCACTCAATCTCATTGATCCAATACATGAGTTCAAAGCTCTCACAAACACAGAAACAGCCACGGAA
GTGGACATTAAGATGAAATTCAGCAATGAAGTCTTCCGATTTGCATCAGCTTGTATGAATTCACGCACCA
ATGGCACCATCCATTTTGGAGTCAAGGACAAACCCCATGGAGAAATTGTTGGTGTGAAAATCACCAGTAA
GGCTGCCTTCATTGACCACTTCAATGTAATGATCAAAAAGTATTTTGAAGAAAGTGAGATCAATGAAGCC
AAGAAGTGTATTCGGGAGCCAAGGTTTGTGGAAGTCCTTCTGCAGAACAATACACCATCTGACAGATTTG
TCATTGAAGTTGATACTATTCCAAAACACTCTATATGTAATGATAAGTATTTCTACATTCAGATGCAAAT
TTGTAAAGATAAAATATGGAAACAAAACCAAAATCTTTCACTGTTTGTAAGAGAAGGGGCTAGCTCTAGG
GATATCCTGGCCAATTCCAAGCAACGGGATGTAGATTTCAAGGCATTTTTACAAAATTTAAAGTCACTGG
TAGCATCTAGAAAAGAGGCTGAAGAAGAGTATGGAATGAAGGCAATGAAGAAGGAGAGTGAAGGACTAAA
GCTGGTTAAACTTCTCATAGGAAACCGAGACTCACTGGATAATTCATACTATGACTGGTACATTCTTGTA
ACAAATAAATGCCATCCAAACCAAATAAAGCACTTAGATTTTTTAAAAGAAATTAAATGGTTTGCTGTGT
TGGAGTTTGATCCTGAATCTATGATCAATGGAGTGGTCAAAGCTTACAAAGAAAGTCGGGTGGCAAACCT
TCACTTTCCAAATCAATATGAAGACAAGACAACTAACATGTGGGAGAAGATTTCTACTCTTAATCTTTAC
CAACAGCCCAGCTGGATTTTCTGCAACGGCAGATCAGACCTGAAAAGCGAGACATATAAACCTCTAGAAC
CACATTTATGGCAGAGAGAAAGAGCTTCAGAAGTCAGGAAACTAATTTTATTTCTCACAGATGAAAATAT
AATGACAAGAGGAAAATTTTTGGTAGTGTTTCTATTACTCTCTTCAGTGGAAAGCCCAGGAGATCCACTC
ATTGAAACTTTCTGGGCTTTCTATCAAGCTCTCAAAGGAATGGAAAATATGTTGTGTATCTCTGTAAACT
CACATATTTATCAACGATGGAAAGATCTACTACAAACAAGAATGAAGATGGAAGATGAACTAACAAACCA
CAGTATTTCCACTTTAAATATAGAACTGGTAAACAGCACTATCCTTAAACTAAAATCGGTGACTCGGTCA
TCAAGAAGGTTTTTGCCCGCCCGTGGATCTTCTTCAGTTATCCTAGAGAAAAAGAAAGAGGATGTCTTGA
CTGCACTGGAAATCCTCTGTGAAAATGAGTGTACAGAGACAGACATCGAGAAAGACAAATCTAAATTCCT
GGAGTTTAAGAAATCAAAAGAAGAACACTTTTATCGAGGTGGCAAAGTATCCTGGTGGAACTTCTATTTT
TCTTCTGAAAACTATTCTTCAGATTTTGTTAAAAGGGACAGTTATGAAAAGCTTAAAGATTTAATACACT
GCTGGGCAGAGTCTCCTAAACCAATATTTGCAAAAATCATCAATCTTTATCATCATCCAGGCTGTGGAGG
TACCACACTGGCTATGCATGTTCTCTGGGACTTAAAGAAAAACTTCAGATGTGCTGTGTTAAAAAACAAG
ACAACTGATTTTGCAGAAATTGCAGAGCAAGTGATCAATCTGGTCACCTATAGGGCAAAGAGCCATCAGG
ATTACATTCCTGTGCTTCTCCTTGTGGATGATTTTGAAGAACAAGAAAATGTCTACTTTCTACAAAATGC
CATCCATTCCGTTTTAGCAGAAAAGGATTTGCGATATGAAAAAACATTGGTAATTATCTTAAACTGCATG
AGATCCCGGAATCCAGATGAAAGTGCAAAATTGGCAGACAGTATTGCACTAAATTACCAACTTTCTTCCA
AGGAACAAAGAGCTTTTGGTGCCAAACTGAAGGAAATTGAAAAGCAGCACAAGAACTGTGAAAACTTTTA
TTCCTTCATGATCATGAAAAGCAATTTTGATGAAACATATATAGAAAATGTAGTCAGGAATATCCTAAAA
GGACAGGATGTTGACAGCAAGGAAGCACAACTCATTTCCTTCCTGGCTTTACTCAGCTCTTATGTTACTG
ACTCTACAATTTCAGTTTCACAGTGTGAAATATTTTTGGGAATCATATACACTAGTACACCCTGGGAACC
TGAAAGCTTAGAAGACAAGATGGGAACTTATTCTACACTTCTAATAAAAACAGAAGTTGCAGAATATGGG
AGATACACAGGTGTGCGTATCATTCACCCTCTGATTGCCCTGTACTGTCTAAAAGAACTGGAAAGAAGCT
ATCACTTGGATAAATGTCAAATTGCATTGAATATATTAGAAGAGAATTTATTCTATGATTCTGGAATAGG
AAGAGACAAATTTCAACATGATGTTCAAACTCTTCTGCTTACAAGACAGCGCAAGGTGTATGGAGATGAA
ACAGACACTCTGTTTTCCCCATTAATGGAAGCTTTACAGAATAAAGACATTGAAAAGGTCTTGAGTGCAG
GAAGTAGACGATTCCCACAAAATGCATTCATTTGTCAAGCCTTAGCAAGACATTTCTACATTAAAGAGAA
GGACTTTAACACAGCTCTGGACTGGGCACGTCAGGCCAAAATGAAAGCACCTAAAAATTCCTATATTTCA
GATACACTAGGTCAAGTCTACAAAAGTGAAATCAAATGGTGGTTGGATGGGAACAAAAACTGTAGGAGCA
TTACTGTTAATGACCTAACACATCTCCTAGAAGCTGCGGAAAAAGCCTCAAGAGCTTTCAAAGAATCCCA
AAGGCAAACTGATAGTAAAAACTATGAAACCGAGAACTGGTCACCACAGAAGTCCCAGAGACGATATGAC
ATGTATAACACAGCTTGTTTCTTGGGTGAAATAGAAGTTGGTCTTTACACTATCCAGATTCTTCAGCTCA
CTCCCTTTTTCCACAAAGAAAATGAATTATCCAAAAAACATATGGTGCAATTTTTATCAGGAAAGTGGAC
CATTCCTCCTGATCCCAGAAATGAATGTTATTTGGCTCTTAGCAAGTTCACATCCCACCTAAAAAATTTA
CAATCAGATCTGAAAAGGTGCTTTGACTTTTTTATTGATTATATGGTTCTTCTGAAAATGAGGTATACCC
AAAAAGAAATTGCAGAAATCATGTTAAGCAAGAAAGTCAGTCGTTGTTTCAGGAAATACACAGAACTTTT
CTGTCATTTGGATCCATGTCTATTACAAAGTAAAGAGAGTCAATTACTCCAGGAGGAGAATTGCAGGAAA
AAGCTAGAAGCTCTGAGAGCAGATAGGTTTGCTGGACTCTTGGAATATCTTAATCCAAACTACAAAGATG
CTACCACCATGGAAAGTATAGTGAATGAATATGCCTTCCTACTGCAGCAAAACTCAAAAAAGCCCATGAC
AAATGAGAAACAAAATTCCATTTTGGCCAACATTATTCTGAGTTGTCTAAAGCCCAACTCCAAGTTAATT
CAACCACTTACCACGCTAAAAAAACAACTCCGAGAGGTCTTGCAATTTGTAGGACTAAGTCATCAATATC
CAGGTCCTTATTTCTTGGCCTGCCTCCTGTTCTGGCCAGAAAATCAAGAGCTAGATCAAGATTCCAAACT
AATAGAAAAGTATGTTTCATCCTTAAATAGATCCTTCAGGGGACAGTACAAGCGCATGTGCAGGTCCAAG
CAGGCAAGCACACTTTTCTATCTGGGCAAAAGGAAGGGTCTAAACAGTATTGTTCACAAGGCCAAAATAG
AGCAGTACTTTGATAAAGCACAAAATACAAATTCCCTCTGGCACAGTGGGGATGTGTGGAAAAAAAATGA
AGTCAAAGACCTCCTGCGTCGTCTAACTGGTCAGGCTGAAGGCAAGCTAATCTCTGTAGAATATGGAACA
GAGGAAAAAATAAAAATACCAGTAATATCTGTTTATTCAGGTCCACTCAGAAGTGGTAGGAACATAGAAA
GAGTGTCTTTCTACCTAGGATTTTCCATTGAAGGCCCTCTGGCATATGATATAGAAGTAATTTAA

Translation (1584 aa):
MSKQVSLPEMIKDWTKEHVKKWVNEDLKINEQYGQILLSEEVTGLVLQELTEKDLVEMGLPWGPALLIKR
SYNKLNSKSPESDNHDPGQLDNSKPSKTEHQKNPKHTKKEEENSMSSNIDYDPREIRDIKQEESILMKEN
VLDEVANAKHKKKGKLKPEQLTCMPYPFDQFHDSHRYIEHYTLQPETGALNLIDPIHEFKALTNTETATE
VDIKMKFSNEVFRFASACMNSRTNGTIHFGVKDKPHGEIVGVKITSKAAFIDHFNVMIKKYFEESEINEA
KKCIREPRFVEVLLQNNTPSDRFVIEVDTIPKHSICNDKYFYIQMQICKDKIWKQNQNLSLFVREGASSR
DILANSKQRDVDFKAFLQNLKSLVASRKEAEEEYGMKAMKKESEGLKLVKLLIGNRDSLDNSYYDWYILV
TNKCHPNQIKHLDFLKEIKWFAVLEFDPESMINGVVKAYKESRVANLHFPNQYEDKTTNMWEKISTLNLY
QQPSWIFCNGRSDLKSETYKPLEPHLWQRERASEVRKLILFLTDENIMTRGKFLVVFLLLSSVESPGDPL
IETFWAFYQALKGMENMLCISVNSHIYQRWKDLLQTRMKMEDELTNHSISTLNIELVNSTILKLKSVTRS
SRRFLPARGSSSVILEKKKEDVLTALEILCENECTETDIEKDKSKFLEFKKSKEEHFYRGGKVSWWNFYF
SSENYSSDFVKRDSYEKLKDLIHCWAESPKPIFAKIINLYHHPGCGGTTLAMHVLWDLKKNFRCAVLKNK
TTDFAEIAEQVINLVTYRAKSHQDYIPVLLLVDDFEEQENVYFLQNAIHSVLAEKDLRYEKTLVIILNCM
RSRNPDESAKLADSIALNYQLSSKEQRAFGAKLKEIEKQHKNCENFYSFMIMKSNFDETYIENVVRNILK
GQDVDSKEAQLISFLALLSSYVTDSTISVSQCEIFLGIIYTSTPWEPESLEDKMGTYSTLLIKTEVAEYG
RYTGVRIIHPLIALYCLKELERSYHLDKCQIALNILEENLFYDSGIGRDKFQHDVQTLLLTRQRKVYGDE
TDTLFSPLMEALQNKDIEKVLSAGSRRFPQNAFICQALARHFYIKEKDFNTALDWARQAKMKAPKNSYIS
DTLGQVYKSEIKWWLDGNKNCRSITVNDLTHLLEAAEKASRAFKESQRQTDSKNYETENWSPQKSQRRYD
MYNTACFLGEIEVGLYTIQILQLTPFFHKENELSKKHMVQFLSGKWTIPPDPRNECYLALSKFTSHLKNL
QSDLKRCFDFFIDYMVLLKMRYTQKEIAEIMLSKKVSRCFRKYTELFCHLDPCLLQSKESQLLQEENCRK
KLEALRADRFAGLLEYLNPNYKDATTMESIVNEYAFLLQQNSKKPMTNEKQNSILANIILSCLKPNSKLI
QPLTTLKKQLREVLQFVGLSHQYPGPYFLACLLFWPENQELDQDSKLIEKYVSSLNRSFRGQYKRMCRSK
QASTLFYLGKRKGLNSIVHKAKIEQYFDKAQNTNSLWHSGDVWKKNEVKDLLRRLTGQAEGKLISVEYGT
EEKIKIPVISVYSGPLRSGRNIERVSFYLGFSIEGPLAYDIEVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH