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Report for CCDS16995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16995.1 Public Mus musculus 2 Top1 23 108 98 CCDS HistoryNCBI Gene:21969Re-query CCDS DB by CCDS ID:16995.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109468.2 ENSMUSP00000105094.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109468.2Link to Ensembl Protein Viewer:ENSMUSP00000105094.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109468Re-query CCDS DB by Protein ID:ENSMUSP00000105094
Original member NCBI NM_009408.2 NP_033434.2 Updated not alive Link to Nucleotide Sequence:NM_009408.2Link to Protein Sequence:NP_033434.2Re-query CCDS DB by Nucleotide ID:NM_009408Re-query CCDS DB by Protein ID:NP_033434
Current member NCBI NM_009408.3 NP_033434.2 Accepted alive Link to Nucleotide Sequence:NM_009408.3Link to Protein Sequence:NP_033434.2Re-query CCDS DB by Nucleotide ID:NM_009408Re-query CCDS DB by Protein ID:NP_033434Link to BLAST:NP_033434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033434.2 767 Q04750 767 100% 0 0

Chromosomal Locations for CCDS 16995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 160646230 160646262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160646608 160646632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160670100 160670202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160682651 160682774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160684448 160684503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160687648 160687743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160690277 160690352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160693696 160693802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160698124 160698239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160702702 160702823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160703572 160703694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160704783 160704970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160705177 160705321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160712645 160712788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160714081 160714266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160715046 160715114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160715713 160715827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160717387 160717514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160720579 160720673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160720927 160721076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160721452 160721554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGAGCGGGGACCATCTCCACAACGATTCCCAGATCGAAGCGGATTTCCGATTGAATGATTCTCACAAAC
ACAAAGATAAACACAAAGATCGAGAACACCGGCATAAGGAGCACAAGAAGGATAAGGATAAGGACCGGGA
AAAGTCTAAGCATAGCAACAGTGAACATAAAGATTCTGAAAAGAAACACAAAGAGAAAGAGAAAACCAAA
CACAAAGATGGCAGCTCAGAAAAACATAAAGACAAACATAAAGACAGAGACAAGGAAAGACGAAAGGAGG
AAAAGATTAGAGCTGCTGGGGATGCAAAAATAAAGAAGGAAAAGGAAAATGGCTTCTCTAGTCCGCCACG
AATTAAAGATGAACCTGAGGATGATGGCTATTTTGCTCCTCCAAAAGAGGATATTAAGCCATTGAAGAGG
CTTCGAGATGAAGATGATGCTGATTATAAACCTAAGAAAATTAAGACAGAAGATATCAAGAAGGAGAAGA
AAAGAAAATCAGAAGAGGAAGAGGATGGTAAACTTAAAAAGCCCAAGAATAAAGATAAAGATAAAAAAGT
TGCTGAGCCAGATAATAAGAAAAAGAAGCCGAAAAAGGAAGAGGAACAGAAGTGGAAATGGTGGGAAGAA
GAACGTTATCCAGAAGGCATCAAATGGAAATTCCTAGAGCATAAAGGGCCTGTCTTCGCTCCACCATATG
AGCCTCTGCCAGAGAGTGTCAAGTTTTACTATGATGGTAAAGTTATGAAGCTGAGTCCTAAAGCAGAAGA
AGTAGCTACATTCTTTGCAAAAATGCTTGACCACGAATATACTACTAAGGAAATATTCAGGAAAAATTTC
TTTAAAGATTGGAGAAAGGAAATGACTAATGACGAAAAAAATACGATTACCAACCTAAGCAAATGCGACT
TTACACAGATGAGCCAGTATTTCAAAGCGCAGTCAGAAGCTCGGAAACAGATGAGCAAGGAAGAAAAATT
GAAAATCAAAGAAGAAAATGAAAAGTTATTGAAAGAATACGGCTTTTGTGTAATGGATAATCATAGAGAG
CGGATTGCCAACTTCAAGATAGAGCCTCCGGGGCTTTTCCGAGGCCGAGGGAACCACCCCAAGATGGGTA
TGCTGAAGAGAAGGATCATGCCTGAGGACATCATCATCAACTGTAGCAAAGACGCAAAGGTTCCTTCTCC
CCCTCCTGGACATAAATGGAAGGAAGTCCGACATGATAACAAGGTTACTTGGCTGGTCTCCTGGACAGAG
AATATCCAAGGTTCTATCAAATATATCATGCTGAATCCCAGTTCACGAATCAAGGGTGAGAAAGACTGGC
AGAAGTATGAGACTGCGCGGCGTCTGAAGAAGTGTGTGGACAAGATCCGAAATCAGTATCGGGAAGACTG
GAAGTCCAAAGAGATGAAAGTTCGTCAGAGAGCTGTAGCACTGTACTTCATTGATAAGCTTGCTCTGAGA
GCAGGCAATGAGAAGGAAGAAGGAGAGACGGCAGACACTGTGGGCTGCTGTTCACTTAGAGTGGAACACA
TCAATTTACACCCAGAATTGGATGGTCAGGAGTATGTGGTGGAATTTGACTTTCCTGGGAAGGACTCAAT
CAGATACTATAACAAAGTCCCAGTTGAGAAACGAGTTTTTAAAAACTTACAACTGTTTATGGAGAACAAG
CAGCCTGAGGACGATCTTTTTGATCGACTTAATACTGGTATTCTAAATAAACATCTTCAGGATCTCATGG
AGGGCTTGACTGCCAAGGTGTTCCGTACCTACAATGCCTCCATCACACTACAGCAGCAGCTTAAAGAGCT
CACAGCCCCTGATGAGAATGTACCAGCGAAGATTCTATCTTATAACCGTGCCAATCGAGCTGTTGCAATT
CTTTGTAACCACCAGAGGGCGCCACCAAAGACCTTTGAGAAGTCAATGATGAACTTGCAGTCTAAGATTG
ATGCCAAGAAAGATCAGTTAGCAGATGCTCGAAGGGACCTGAAAAGTGCTAAGGCTGATGCCAAAGTCAT
GAAGGATGCAAAGACCAAGAAGGTAGTAGAGTCAAAAAAGAAGGCTGTACAGAGACTAGAAGAGCAGTTG
ATGAAGCTGGAAGTTCAAGCCACAGATCGAGAGGAGAACAAACAAATTGCCTTGGGGACCTCCAAACTCA
ATTATCTGGACCCTAGGATCACAGTGGCTTGGTGCAAAAAGTGGGGGGTCCCAATTGAGAAGATTTACAA
CAAAACCCAGAGGGAGAAGTTTGCTTGGGCCATTGATATGACTGATGAGGACTACGAGTTTTGA

Translation (767 aa):
MSGDHLHNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKDKDKDREKSKHSNSEHKDSEKKHKEKEKTK
HKDGSSEKHKDKHKDRDKERRKEEKIRAAGDAKIKKEKENGFSSPPRIKDEPEDDGYFAPPKEDIKPLKR
LRDEDDADYKPKKIKTEDIKKEKKRKSEEEEDGKLKKPKNKDKDKKVAEPDNKKKKPKKEEEQKWKWWEE
ERYPEGIKWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNF
FKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRE
RIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTE
NIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALR
AGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENK
QPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAI
LCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQL
MKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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