NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8467.1 Public Homo sapiens 11 HYLS1 24 110 108 CCDS HistoryNCBI Gene:219844Re-query CCDS DB by CCDS ID:8467.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8467.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356438.7 ENSP00000348815.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356438.7Link to Ensembl Protein Viewer:ENSP00000348815.3Re-query CCDS DB by Nucleotide ID:ENST00000356438Re-query CCDS DB by Protein ID:ENSP00000348815
Original member Current member EBI ENST00000425380.7 ENSP00000414884.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000425380.7Link to Ensembl Protein Viewer:ENSP00000414884.2Re-query CCDS DB by Nucleotide ID:ENST00000425380Re-query CCDS DB by Protein ID:ENSP00000414884
Original member Current member EBI ENST00000526028.1 ENSP00000436833.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526028.1Link to Ensembl Protein Viewer:ENSP00000436833.1Re-query CCDS DB by Nucleotide ID:ENST00000526028Re-query CCDS DB by Protein ID:ENSP00000436833
Original member Current member NCBI NM_001134793.2 NP_001128265.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001134793.2Link to Protein Sequence:NP_001128265.1Re-query CCDS DB by Nucleotide ID:NM_001134793Re-query CCDS DB by Protein ID:NP_001128265Link to BLAST:NP_001128265.1
Original member Current member NCBI NM_001377269.1 NP_001364198.1 Accepted alive Link to Nucleotide Sequence:NM_001377269.1Link to Protein Sequence:NP_001364198.1Re-query CCDS DB by Nucleotide ID:NM_001377269Re-query CCDS DB by Protein ID:NP_001364198Link to BLAST:NP_001364198.1
Original member Current member NCBI NM_001377270.1 NP_001364199.1 Accepted alive Link to Nucleotide Sequence:NM_001377270.1Link to Protein Sequence:NP_001364199.1Re-query CCDS DB by Nucleotide ID:NM_001377270Re-query CCDS DB by Protein ID:NP_001364199Link to BLAST:NP_001364199.1
Original member Current member NCBI NM_145014.3 NP_659451.1 Accepted alive Link to Nucleotide Sequence:NM_145014.3Link to Protein Sequence:NP_659451.1Re-query CCDS DB by Nucleotide ID:NM_145014Re-query CCDS DB by Protein ID:NP_659451Link to BLAST:NP_659451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128265.1 299 Q96M11 299 100% 0 0
NP_001364198.1 299 Q96M11 299 100% 0 0
NP_001364199.1 299 Q96M11 299 100% 0 0
NP_659451.1 299 Q96M11 299 100% 0 0

Chromosomal Locations for CCDS 8467.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 125899369 125900268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGAAGAACTTCTACCTGATGGACAAATATGGGCTAATATGGATCCAGAAGAACGAATGTTGGCAGCTG
CTACAGCTTTTACCCACATCTGTGCAGGGCAGGGTGAAGGAGATGTCAGGAGAGAAGCCCAATCTATCCA
ATATGATCCCTACAGTAAAGCTTCAGTAGCCCCAGGGAAGCGACCTGCTCTTCCTGTGCAACTACAGTAC
CCACATGTAGAAAGTAATGTCCCTTCAGAAACAGTCTCTGAGGCCTCCCAAAGACTCCGAAAGCCAGTGA
TGAAGAGAAAGGTGCTGCGCAGAAAGCCAGATGGGGAAGTATTAGTAACAGATGAGTCGATTATCAGTGA
ATCAGAATCTGGTACAGAAAATGATCAGGATCTCTGGGACTTAAGACAAAGGCTGATGAATGTACAGTTC
CAGGAAGACAAGGAATCTTCATTTGATGTTTCACAAAAATTTAACCTACCACATGAATACCAAGGAATTT
CTCAAGATCAGCTCATTTGCTCTCTACAAAGAGAAGGAATGGGCTCTCCAGCTTACGAACAAGACCTGAT
TGTTGCCAGCAGACCCAAGTCCTTTATTCTCCCAAAGCTGGACCAGTTAAGCCGAAACCGGGGCAAGACA
GACCGGGTAGCCCGGTATTTTGAGTACAAACGGGACTGGGACTCAATACGTTTACCTGGTGAAGATCATA
GAAAGGAATTACGCTGGGGTGTCCGAGAGCAGATGCTTTGTCGAGCAGAACCCCAATCCAAACCTCAGCA
TATATATGTCCCAAACAATTATCTAGTACCAACAGAGAAGAAAAGGTCTGCACTCCGTTGGGGTGTTCGT
TGTGACCTTGCAAATGGTGTCATACCCAGGAAGCTTCCCTTCCCTCTTTCTCCTTCTTAA

Translation (299 aa):
MEELLPDGQIWANMDPEERMLAAATAFTHICAGQGEGDVRREAQSIQYDPYSKASVAPGKRPALPVQLQY
PHVESNVPSETVSEASQRLRKPVMKRKVLRRKPDGEVLVTDESIISESESGTENDQDLWDLRQRLMNVQF
QEDKESSFDVSQKFNLPHEYQGISQDQLICSLQREGMGSPAYEQDLIVASRPKSFILPKLDQLSRNRGKT
DRVARYFEYKRDWDSIRLPGEDHRKELRWGVREQMLCRAEPQSKPQHIYVPNNYLVPTEKKRSALRWGVR
CDLANGVIPRKLPFPLSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH