NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS41650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41650.1 Public Homo sapiens 11 MPEG1 24 110 108 CCDS HistoryNCBI Gene:219972Re-query CCDS DB by CCDS ID:41650.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41650.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361050.4 ENSP00000354335.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361050.4Link to Ensembl Protein Viewer:ENSP00000354335.3Re-query CCDS DB by Nucleotide ID:ENST00000361050Re-query CCDS DB by Protein ID:ENSP00000354335
Original member Current member NCBI NM_001039396.2 NP_001034485.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039396.2Link to Protein Sequence:NP_001034485.1Re-query CCDS DB by Nucleotide ID:NM_001039396Re-query CCDS DB by Protein ID:NP_001034485Link to BLAST:NP_001034485.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034485.1 716 Q2M385-1 716 100% 0 0

Chromosomal Locations for CCDS 41650.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59210715 59212865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGAACAACTTCAGGGCCACCATCCTCTTCTGGGCAGCGGCAGCATGGGCTAAATCAGGCAAGCCTTCGG
GA
GAGATGGACGAAGTTGGAGTTCAAAAATGCAAGAATGCCTTGAAACTACCTGTCCTGGAAGTCCTACC
T
GGAGGGGGCTGGGACAATCTGCGGAATGTGGACATGGGACGAGTTATGGAATTGACTTACTCCAACTGC
AGG
ACAACAGAGGATGGACAGTATATCATCCCTGATGAAATCTTCACCATTCCCCAGAAACAGAGCAACC
TG
GAGATGAACTCAGAAATCCTGGAATCCTGGGCAAATTACCAGAGTAGCACCTCCTACTCCATCAACAC
A
GAACTCTCTCTTTTTTCCAAAGTCAATGGCAAGTTTTCCACTGAGTTCCAGAGGATGAAGACCCTCCAA
GTG
AAGGACCAAGCTATAACTACCCGAGTTCAGGTAAGAAACCTCGTCTACACAGTCAAAATCAACCCAA
CT
TTAGAGCTAAGCTCAGGTTTTAGGAAGGAACTCCTTGACATCTCTGACCGTCTAGAGAACAACCAGAC
G
AGGATGGCCACCTACCTGGCAGAACTCCTGGTGCTCAACTATGGCACCCACGTCACCACCAGTGTCGAC
GCT
GGGGCTGCTCTTATTCAGGAGGACCACCTCAGGGCCTCCTTCCTCCAAGACAGCCAGAGCAGTCGTA
GT
GCCGTGACCGCCTCTGCTGGACTTGCCTTTCAAAACACCGTGAACTTCAAATTTGAGGAAAACTATAC
C
TCGCAGAATGTCCTCACCAAGAGCTACCTCTCAAACCGAACCAACTCCAGGGTGCAGAGCATTGGAGGG
GTT
CCTTTTTACCCAGGCATCACCCTCCAGGCCTGGCAGCAGGGTATCACCAACCACCTGGTGGCCATCG
AC
CGCTCTGGCCTGCCGCTGCATTTCTTCATCAACCCCAACATGCTACCTGACTTGCCAGGCCCCCTGGT
G
AAGAAGGTGTCAAAGACAGTGGAAACTGCTGTGAAGCGCTATTATACATTCAACACCTACCCTGGCTGC
ACA
GATCTCAATTCTCCCAACTTCAATTTTCAGGCCAACACGGATGATGGCTCCTGCGAGGGGAAAATGA
CC
AACTTCTCTTTCGGTGGGGTTTATCAGGAATGCACTCAGCTCTCAGGGAATAGGGATGTCCTCCTCTG
C
CAAAAGTTGGAGCAGAAGAATCCACTCACTGGTGATTTCTCCTGCCCCTCTGGCTACTCCCCGGTGCAC
CTG
TTATCCCAGATCCACGAGGAGGGTTACAACCACCTGGAGTGTCATCGAAAGTGCACTCTCCTCGTCT
TC
TGCAAGACCGTGTGTGAAGATGTGTTCCAGGTGGCAAAAGCTGAATTTAGGGCTTTTTGGTGTGTGGC
C
AGCAGCCAAGTACCTGAAAACTCAGGACTGCTTTTTGGGGGCCTCTTCAGCAGCAAGAGCATAAACCCC
ATG
ACAAATGCACAGTCATGCCCAGCCGGCTACTTTCCACTGAGACTCTTTGAAAACCTCAAGGTATGTG
TT
TCTCAGGACTATGAGTTGGGAAGCAGGTTTGCGGTCCCCTTTGGCGGGTTCTTTAGCTGCACAGTTGG
G
AACCCCCTGGTAGATCCTGCTATATCCAGAGATTTAGGGGCACCGTCTCTGAAAAAGTGCCCCGGGGGC
TTC
AGCCAGCACCCAGCCCTCATCAGCGATGGATGCCAAGTGTCCTATTGCGTCAAATCCGGGCTCTTCA
CA
GGAGGGTCCCTGCCCCCTGCCAGGCTCCCACCTTTCACCCGGCCACCCCTCATGAGTCAGGCTGCCAC
C
AATACTGTCATAGTGACCAATTCTGAGAATGCGAGATCCTGGATTAAAGACTCCCAGACCCACCAGTGG
AGG
CTGGGAGAACCGATAGAGCTGCGGAGGGCCATGAATGTCATCCATGGGGATGGTGGTGGTCTGTCAG
GA
GGGGCTGCAGCTGGGGTCACAGTGGGGGTCACCACCATTCTGGCTGTTGTTATCACCTTGGCCATCTA
C
GGCACCCGGAAGTTCAAGAAGAAAGCATATCAGGCAATTGAGGAAAGGCAGAGTTTGGTTCCAGGCACT
GCA
GCAACTGGAGACACCACTTACCAAGAGCAGGGGCAGAGTCCAGCTTAA


Translation (716 aa):
MNNFRATILFWAAAAWAKSGKPSGEMDEVGVQKCKNALKLPVLEVLPGGGWDNLRNVDMGRVMELTYSNC
R
TTEDGQYIIPDEIFTIPQKQSNLEMNSEILESWANYQSSTSYSINTELSLFSKVNGKFSTEFQRMKTLQ
V
KDQAITTRVQVRNLVYTVKINPTLELSSGFRKELLDISDRLENNQTRMATYLAELLVLNYGTHVTTSVD
A
GAALIQEDHLRASFLQDSQSSRSAVTASAGLAFQNTVNFKFEENYTSQNVLTKSYLSNRTNSRVQSIGG
V
PFYPGITLQAWQQGITNHLVAIDRSGLPLHFFINPNMLPDLPGPLVKKVSKTVETAVKRYYTFNTYPGC
T
DLNSPNFNFQANTDDGSCEGKMTNFSFGGVYQECTQLSGNRDVLLCQKLEQKNPLTGDFSCPSGYSPVH
L
LSQIHEEGYNHLECHRKCTLLVFCKTVCEDVFQVAKAEFRAFWCVASSQVPENSGLLFGGLFSSKSINP
M
TNAQSCPAGYFPLRLFENLKVCVSQDYELGSRFAVPFGGFFSCTVGNPLVDPAISRDLGAPSLKKCPGG
F
SQHPALISDGCQVSYCVKSGLFTGGSLPPARLPPFTRPPLMSQAATNTVIVTNSENARSWIKDSQTHQW
R
LGEPIELRRAMNVIHGDGGGLSGGAAAGVTVGVTTILAVVITLAIYGTRKFKKKAYQAIEERQSLVPGT
A
ATGDTTYQEQGQSPA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser