NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15501.1 Public Mus musculus 1 Cd48 23 108 98 CCDS HistoryNCBI Gene:12506Re-query CCDS DB by CCDS ID:15501.1Re-query CCDS DB by GeneID:12506See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068584.6 ENSMUSP00000064241.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068584.6Link to Ensembl Protein Viewer:ENSMUSP00000064241.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068584Re-query CCDS DB by Protein ID:ENSMUSP00000064241
Original member Current member NCBI NM_007649.5 NP_031675.1 Accepted alive Link to Nucleotide Sequence:NM_007649.5Link to Protein Sequence:NP_031675.1Re-query CCDS DB by Nucleotide ID:NM_007649Re-query CCDS DB by Protein ID:NP_031675Link to BLAST:NP_031675.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031675.1 240 P18181 240 100% 0 0

Chromosomal Locations for CCDS 15501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171682094 171682166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171695664 171695966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171699384 171699650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171704798 171704877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGTGCTTCATAAAACAGGGATGGTGTCTGGTCCTGGAACTGCTACTGCTGCCCTTGGGAACTGGATTTC
AAGGTCATTCAATACCAGATATAAATGCCACCACCGGCAGCAATGTAACCCTGAAAATCCATAAGGACCC
ACTTGGACCATATAAACGTATCACCTGGCTTCATACTAAAAATCAGAAGATTTTAGAGTACAACTATAAT
AGTACAAAGACAATCTTCGAGTCTGAATTTAAAGGCAGGGTTTATCTTGAAGAAAACAATGGTGCACTTC
ATATCTCTAATGTCCGGAAAGAGGACAAAGGTACCTACTACATGAGAGTGCTGCGTGAAACTGAGAACGA
GTTGAAGATAACCCTGGAAGTATTTGATCCTGTGCCCAAGCCTTCCATAGAAATCAATAAGACTGAAGCG
TCGACTGATTCCTGTCACCTGAGGCTATCGTGTGAGGTAAAGGACCAGCATGTTGACTATACTTGGTATG
AGAGCTCGGGACCTTTCCCCAAAAAGAGTCCAGGATATGTGCTCGATCTCATCGTCACACCACAGAACAA
GTCTACATTTTACACCTGCCAAGTCAGCAATCCTGTAAGCAGCAAGAACGACACAGTGTACTTCACTCTA
CCTTGTGATCTAGCCAGATCTTCTGGAGTATGTTGGACTGCAACTTGGCTAGTGGTCACAACACTCATCA
TTCACAGGATCCTGTTAACCTGA

Translation (240 aa):
MCFIKQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIHKDPLGPYKRITWLHTKNQKILEYNYN
STKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLRETENELKITLEVFDPVPKPSIEINKTEA
STDSCHLRLSCEVKDQHVDYTWYESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTL
PCDLARSSGVCWTATWLVVTTLIIHRILLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH