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Report for CCDS35690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35690.1 Public Mus musculus 1 Tsn 23 108 98 CCDS HistoryNCBI Gene:22099Re-query CCDS DB by CCDS ID:35690.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027623.8 ENSMUSP00000027623.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027623.8Link to Ensembl Protein Viewer:ENSMUSP00000027623.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027623Re-query CCDS DB by Protein ID:ENSMUSP00000027623
Original member Current member NCBI NM_011650.4 NP_035780.1 Accepted alive Link to Nucleotide Sequence:NM_011650.4Link to Protein Sequence:NP_035780.1Re-query CCDS DB by Nucleotide ID:NM_011650Re-query CCDS DB by Protein ID:NP_035780Link to BLAST:NP_035780.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035780.1 228 Q62348 228 100% 0 0

Chromosomal Locations for CCDS 35690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 118300804 118301037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118304691 118304770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118305200 118305315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118308745 118308841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118309773 118309866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118311001 118311066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGTCTGTGAGCGAGATCTTCGTGGAGCTGCAGGGCTTTTTGGCTGCCGAGCAGGACATCCGAGAGGAAA
TACGAAAAGTTGTACAGAGTTTAGAACAAACTGCTCGAGAGATTTTGACCCTACTTCAAGGGGTCCACCA
GGGTACTGGATTTCAGGACATTCCAAAGAGGTGCTTGAAAGCGAGAGAACATTTCAGTACAGTAAAAACA
CATCTCACGTCCCTGAAGACCAAGTTCCCCGCTGAGCAGTATTACAGGTTTCATGAGCATTGGCGGTTCG
TGCTTCAGCGCCTGGTCTTCCTGGCAGCATTTGTGGTATATTTGGAAACAGAGACCCTGGTGACCCGAGA
GGCTGTTACAGAGATTCTTGGCATTGAACCAGATCGGGAAAAAGGGTTTCATCTGGATGTGGAAGATTAT
CTCTCAGGAGTTTTAATTCTTGCCAGTGAACTGTCGAGGCTGTCTGTCAACAGTGTCACTGCTGGAGACT
ACTCTCGGCCCCTTCACATTTCTACTTTCATCAATGAGCTGGATTCTGGTTTTCGTCTTCTCAATCTGAA
AAATGACTCCCTGAGGAAGCGCTACGACGGCTTGAAGTACGATGTGAAGAAAGTAGAGGAGGTGGTCTAT
GACCTTTCCATCCGAGGCTTCAATAAGGAGACAGCAGCGGCTTGTGGTGAAAAATAG

Translation (228 aa):
MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGTGFQDIPKRCLKAREHFSTVKT
HLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDY
LSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVY
DLSIRGFNKETAAACGEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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