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Report for CCDS28778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28778.1 Public Mus musculus 17 Or2n1c 23 108 98 CCDS HistoryNCBI Gene:258329Re-query CCDS DB by CCDS ID:28778.1Re-query CCDS DB by GeneID:258329See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28778.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076245.2 ENSMUSP00000075595.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076245.2Link to Ensembl Protein Viewer:ENSMUSP00000075595.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076245Re-query CCDS DB by Protein ID:ENSMUSP00000075595
Original member Current member EBI ENSMUST00000213217.1 ENSMUSP00000150535.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213217.1Link to Ensembl Protein Viewer:ENSMUSP00000150535.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213217Re-query CCDS DB by Protein ID:ENSMUSP00000150535
Original member Current member NCBI NM_146332.1 NP_666444.1 Accepted alive Link to Nucleotide Sequence:NM_146332.1Link to Protein Sequence:NP_666444.1Re-query CCDS DB by Nucleotide ID:NM_146332Re-query CCDS DB by Protein ID:NP_666444Link to BLAST:NP_666444.1

Chromosomal Locations for CCDS 28778.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38208247 38209185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATATTGGTCAATAAAAGTCACCCAGAAGAGTTTATTCTACTTGGTTTTGCAGATCGTCCTTGGCTGG
AACTTCCTCTCTTTATTATTCTTCTGGTAACATACCCCACAGCCATGATTGGAAACATCGCCATCATTCT
CATGTCTATATTAGACCCCTGTCTCCACAGCCCCATGTATTTCTTTCTCACCAACCTCTCCTTTCTGGAC
ATGTGCTACACCACAAGCATTGTACCTCAGATGTTAATTAACCTTTGGGGCTCTACAAAGACCATCAGCT
ACTTGAGGTGTGTAGTTCAGCTTTATTTCTTCCACACAATGGGAGGTACAGAGTGTGTCCTCCTAGCTCT
TATGTCCTTTGACCGATATGTGGCCATCTGCAAACCCCTGCACTATACCCTCATAATGAATCGGCGTAAC
TGCCTCCTGTTAGTGTCCACTGTGTGGCTGACTGGAATTTCCTATGCTGTCTCAGAGGCCACTGTAACAC
TGCAATTGCCTCTATGTGGCCACAATAAAATGGATCATTTAGTGTGTGAGATTCCAATTCTGATAAAAAC
TGCTTGTGGTGAAAAAGAGACTAATGAGCTTGCTCTCTCTGTAATATGCATTTTTCTTTTAGCTGTCCCT
CTGTGTTTAATTCTTGCCTCCTATGCTAGTATTGGACATGCTGTCTTTAAAATCAAATCAATAGAAGGAA
GGAAAAAGGCTTTTGGGACATGTTCCTCTCATCTCATTGTAGTTCTCTTGTTCTATGGCCCAGGTATTAG
TATGTATCTTCAGCCTCCCTCCTCTATTACAAAAGACCAACCTAAGTTCATGGCTCTCTTCTATGGAGTA
GTCACTCCTACACTGAACCCCTTCATTTATACTCTGAGAAATAAGGATGTTAAGGGGGCATTAGGTAACC
TATTCAGAAACATTTTTATTCCGAAGTGA

Translation (312 aa):
MILVNKSHPEEFILLGFADRPWLELPLFIILLVTYPTAMIGNIAIILMSILDPCLHSPMYFFLTNLSFLD
MCYTTSIVPQMLINLWGSTKTISYLRCVVQLYFFHTMGGTECVLLALMSFDRYVAICKPLHYTLIMNRRN
CLLLVSTVWLTGISYAVSEATVTLQLPLCGHNKMDHLVCEIPILIKTACGEKETNELALSVICIFLLAVP
LCLILASYASIGHAVFKIKSIEGRKKAFGTCSSHLIVVLLFYGPGISMYLQPPSSITKDQPKFMALFYGV
VTPTLNPFIYTLRNKDVKGALGNLFRNIFIPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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