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Report for CCDS22826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22826.1 Public Mus musculus 9 Ankrd49 23 108 98 CCDS HistoryNCBI Gene:56503Re-query CCDS DB by CCDS ID:22826.1Re-query CCDS DB by GeneID:56503See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034406.3 ENSMUSP00000034406.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034406.3Link to Ensembl Protein Viewer:ENSMUSP00000034406.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034406Re-query CCDS DB by Protein ID:ENSMUSP00000034406
Original member Current member EBI ENSMUST00000216037.1 ENSMUSP00000149874.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216037.1Link to Ensembl Protein Viewer:ENSMUSP00000149874.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216037Re-query CCDS DB by Protein ID:ENSMUSP00000149874
Original member Current member EBI ENSMUST00000216372.1 ENSMUSP00000151079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216372.1Link to Ensembl Protein Viewer:ENSMUSP00000151079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216372Re-query CCDS DB by Protein ID:ENSMUSP00000151079
Original member Current member NCBI NM_001348260.1 NP_001335189.1 Accepted alive Link to Nucleotide Sequence:NM_001348260.1Link to Protein Sequence:NP_001335189.1Re-query CCDS DB by Nucleotide ID:NM_001348260Re-query CCDS DB by Protein ID:NP_001335189Link to BLAST:NP_001335189.1
Original member Current member NCBI NM_019683.4 NP_062657.2 Accepted alive Link to Nucleotide Sequence:NM_019683.4Link to Protein Sequence:NP_062657.2Re-query CCDS DB by Nucleotide ID:NM_019683Re-query CCDS DB by Protein ID:NP_062657Link to BLAST:NP_062657.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335189.1 238 Q8VE42 238 100% 0 0
NP_062657.2 238 Q8VE42 238 100% 0 0

Chromosomal Locations for CCDS 22826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 14781150 14781611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14782615 14782869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGAAAAAGAAAAAAAGGATGATGAAAAACCAGACCTGGAAAACTCTGTGGACTTTTCTGAACAGTTTA
ACCAGCTTGAATTGTTGAAAACTCATGGACACCTGATTCCCACTGGTACTCAGAGTCTCTGGGTAGGCAA
TTCTGATGAAGATGAAGAGCAAGAGGAAAAAAACGAAGAGTGGTACCAATTGCAAGAAAAAAAGATGGAA
AAAGATCCAAGCAAATTGCTTCTTTGGGCTGCTGAAAAAAATCGGCTTGCTACAGTGCAGAGACTACTCT
CTGAGAAGGCCGCTGAAGTGAACACTAGGGATGAAGATGAGTATACCCCTCTTCACCGAGCAGCCTACAG
TGGGCATATAGATGTTGTTCGTGAGCTGGTGGCTAAGGGGGCAGATGTTCATGCAGTGACTGTGGATGGC
TGGACACCACTGCATAGTGCTTGTAAGTGGAATAATACCAAGGTGGCCTCTTTCTTACTTCAGCATGATG
CAGACATCAACGCCCAAACGAAAGGCCTTTTGACCCCTTTGCACCTTGCTGCTGGGAACAGAGACAGCAG
AGACACTCTGGAACTCCTCCTGATGAATCGTTACATCAAACCAGAGCTGAAGAACAACTCACAAGAAACT
GCTTCTGATATCGCCAGGAGGACAAGCATCTATCACTACCTCTTTGAAATTGCGGAAGGCTGTACAAACT
CTTCACCTCCGTCTTAA

Translation (238 aa):
MEKEKKDDEKPDLENSVDFSEQFNQLELLKTHGHLIPTGTQSLWVGNSDEDEEQEEKNEEWYQLQEKKME
KDPSKLLLWAAEKNRLATVQRLLSEKAAEVNTRDEDEYTPLHRAAYSGHIDVVRELVAKGADVHAVTVDG
WTPLHSACKWNNTKVASFLLQHDADINAQTKGLLTPLHLAAGNRDSRDTLELLLMNRYIKPELKNNSQET
ASDIARRTSIYHYLFEIAEGCTNSSPPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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