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Report for CCDS24604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24604.1 Public Mus musculus 11 Or2y1f 23 108 98 CCDS HistoryNCBI Gene:258462Re-query CCDS DB by CCDS ID:24604.1Re-query CCDS DB by GeneID:258462See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189851.2 ENSMUSP00000140904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189851.2Link to Ensembl Protein Viewer:ENSMUSP00000140904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189851Re-query CCDS DB by Protein ID:ENSMUSP00000140904
Original member Current member EBI ENSMUST00000214170.1 ENSMUSP00000149127.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214170.1Link to Ensembl Protein Viewer:ENSMUSP00000149127.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214170Re-query CCDS DB by Protein ID:ENSMUSP00000149127
Original member Current member EBI ENSMUST00000217275.1 ENSMUSP00000149746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217275.1Link to Ensembl Protein Viewer:ENSMUSP00000149746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217275Re-query CCDS DB by Protein ID:ENSMUSP00000149746
Original member Current member EBI ENSMUST00000214598.1 ENSMUSP00000150516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214598.1Link to Ensembl Protein Viewer:ENSMUSP00000150516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214598Re-query CCDS DB by Protein ID:ENSMUSP00000150516
Original member Current member EBI ENSMUST00000215861.1 ENSMUSP00000150526.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215861.1Link to Ensembl Protein Viewer:ENSMUSP00000150526.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215861Re-query CCDS DB by Protein ID:ENSMUSP00000150526
Original member Current member NCBI NM_146470.2 NP_666681.1 Accepted alive Link to Nucleotide Sequence:NM_146470.2Link to Protein Sequence:NP_666681.1Re-query CCDS DB by Nucleotide ID:NM_146470Re-query CCDS DB by Protein ID:NP_666681Link to BLAST:NP_666681.1

Chromosomal Locations for CCDS 24604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49293323 49294258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGAAAGCTTCAACATCAGTTTGGGTAAAGGCTTCATTTTGGTGGGCTTCTCAGACTGGCCTGCACTAG
AACTCATCTTTTTTATTTATATTTTGATTTTCTACTCCCTAACTCTCTTTGGGAACACTGCCATCATCGC
TCTCTCCCGAATGGACCTTCAACTGCACACCCCCATGTACTACTTCCTCTGCCACCTCTCCTTCCTGGAC
CTCTGCTTCACCACCAGCACCGTGCCCCAGCTCCTCATCAACCTCCATGGACAAGACAGGACCATCAGCT
ATGGAGGGTGTGTGTCTCAGCTCTTCATAACTCTTGCTCTGGGATCCACAGAGAGTGTGCTCCTGGTGGT
GATGGCTTTTGACCGCTATGCTGCTGTGTGTCGTCCACTGCACTACATGAACATCATGCACCCCGTTCTC
TGCCAGGCATTGGCTATTGCTTCCTGGGTAGGAGGCTTCTTGAACTCTCTGATTCAAACAGGCCTCATGA
TGGCCATGCCACTCTGTGGACATCGACTGAATCACTTCTTCTGTGAGATGCCTGTCTTCCTCAAGTTGGC
CTGCCAGGACACAGGAGGAACAGAGGCCAAGATGTTTGTGGCCAGAGCAGTGATTGTTGCAGTGCCTGCC
ATGCTCATTCTAGGCTCCTATGCACAGATTGCTAGGGCGGTGCTGAAGGTCAAGTCAGTGGCTGCACGCA
GAAAGGCTGCTGGGACTTGTGGCTCCCACCTCCTGGTGGTTTCTCTGTTCTATGGCTCAGCCACCTACAC
ATACTTACAACCCAAAGACAGCTATTCTGAGAGCAAGGGGAAGTTTGTGGCCCTTTTTTATACTATCATC
ACCCCCATGTTCAACCCTCTGATCTATACCCTGAGAAACAAAGATATGAAGGGGGCTCTGTGGAAGGTAC
TAGGAAGAGCTGCAGCCACAGGGTAG

Translation (311 aa):
MESFNISLGKGFILVGFSDWPALELIFFIYILIFYSLTLFGNTAIIALSRMDLQLHTPMYYFLCHLSFLD
LCFTTSTVPQLLINLHGQDRTISYGGCVSQLFITLALGSTESVLLVVMAFDRYAAVCRPLHYMNIMHPVL
CQALAIASWVGGFLNSLIQTGLMMAMPLCGHRLNHFFCEMPVFLKLACQDTGGTEAKMFVARAVIVAVPA
MLILGSYAQIARAVLKVKSVAARRKAAGTCGSHLLVVSLFYGSATYTYLQPKDSYSESKGKFVALFYTII
TPMFNPLIYTLRNKDMKGALWKVLGRAAATG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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