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Report for CCDS8541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8541.1 Public Homo sapiens 12 PLEKHG6 24 110 108 CCDS HistoryNCBI Gene:55200Re-query CCDS DB by CCDS ID:8541.1Re-query CCDS DB by GeneID:55200See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8541.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000011684.11 ENSP00000011684.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000011684.11Link to Ensembl Protein Viewer:ENSP00000011684.7Re-query CCDS DB by Nucleotide ID:ENST00000011684Re-query CCDS DB by Protein ID:ENSP00000011684
Original member Current member EBI ENST00000396988.7 ENSP00000380185.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396988.7Link to Ensembl Protein Viewer:ENSP00000380185.3Re-query CCDS DB by Nucleotide ID:ENST00000396988Re-query CCDS DB by Protein ID:ENSP00000380185
Original member Current member EBI ENST00000684764.1 ENSP00000506982.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684764.1Link to Ensembl Protein Viewer:ENSP00000506982.1Re-query CCDS DB by Nucleotide ID:ENST00000684764Re-query CCDS DB by Protein ID:ENSP00000506982
Original member Current member NCBI NM_001144856.2 NP_001138328.1 Accepted alive Link to Nucleotide Sequence:NM_001144856.2Link to Protein Sequence:NP_001138328.1Re-query CCDS DB by Nucleotide ID:NM_001144856Re-query CCDS DB by Protein ID:NP_001138328Link to BLAST:NP_001138328.1
Original member Current member NCBI NM_001384598.1 NP_001371527.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384598.1Link to Protein Sequence:NP_001371527.1Re-query CCDS DB by Nucleotide ID:NM_001384598Re-query CCDS DB by Protein ID:NP_001371527Link to BLAST:NP_001371527.1
Original member Current member NCBI NM_018173.4 NP_060643.2 Accepted alive Link to Nucleotide Sequence:NM_018173.4Link to Protein Sequence:NP_060643.2Re-query CCDS DB by Nucleotide ID:NM_018173Re-query CCDS DB by Protein ID:NP_060643Link to BLAST:NP_060643.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138328.1 790 Q3KR16-1 790 100% 0 0
NP_001371527.1 790 Q3KR16-1 790 100% 0 0
NP_060643.2 790 Q3KR16-1 790 100% 0 0

Chromosomal Locations for CCDS 8541.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6312227 6312364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6313629 6313784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6315005 6315169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6315554 6315649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6315869 6315919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6316255 6316404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6317303 6317413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6317547 6317696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6317857 6317994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6318301 6318420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6318745 6318877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6318993 6319108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6326428 6326573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6327254 6327946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6328136 6328145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGAAGGCCTTTGGTCCTCCACATGAGGGCCCCCTCCAAGGACTCGTGGCCTCCCGCATTGAGACTTATG
GGGGCCGGCATCGAGCCTCTGCTCAGAGCACTGCTGGCAGACTCTATCCCCGAGGATACCCTGTGCTGGA
TCCCAGTCGCCGACGCCTCCAGCAGTATGTCCCCTTTGCCAGGGGTTCTGGCCAGGCCCGAGGCCTGTCA
CCCATGAGACTGCGAGATCCAGAGCCCGAGAAGAGGCACGGGGGCCATGTGGGGGCTGGCCTGCTTCACT
CCCCCAAACTCAAGGAACTCACCAAGGCCCATGAGCTGGAGGTGAGGCTGCACACTTTCAGCATGTTTGG
GATGCCCCGGCTGCCCCCTGAGGACCGGCGGCACTGGGAGATAGGAGAGGGTGGCGACAGTGGCCTGACC
ATCGAGAAGTCCTGGAGGGAGCTGGTGCCTGGGCACAAGGAGATGAGCCAGGAGCTCTGCCACCAACAGG
AGGCCCTGTGGGAGCTCCTGACCACCGAGCTGATCTACGTGAGAAAGCTCAAGATCATGACTGATCTGCT
AGCCGCCGGCCTGCTGAACCTGCAGCGAGTGGGACTGCTGATGGAAGTGTCAGCTGAGACCCTGTTTGGA
AATGTCCCCAGCCTGATTCGAACCCACCGGAGCTTTTGGGATGAGGTGCTGGGGCCCACCCTGGAGGAGA
CTCGGGCCTCGGGCCAGCCTCTGGACCCCATTGGTCTGCAAAGTGGCTTCCTGACGTTTGGCCAGCGGTT
CCACCCCTATGTCCAGTACTGCCTCCGAGTGAAGCAGACCATGGCTTACGCCCGAGAACAGCAAGAAACT
AACCCTCTCTTCCATGCCTTCGTGCAGTGGTGTGAGAAGCACAAGCGCTCTGGGAGGCAGATGCTCTGTG
ACTTGCTTATCAAGCCCCACCAGCGCATCACCAAGTACCCACTGCTGCTCCATGCTGTGCTCAAGAGGAG
CCCCGAGGCACGAGCCCAAGAGGCCCTGAATGCCATGATTGAAGCCGTGGAGTCATTCCTGCGACACATC
AATGGGCAGGTCCGCCAGGGCGAAGAGCAAGAGAGCTTGGCGGCTGCAGCACAACGCATCGGGCCCTACG
AGGTGCTGGAGCCACCCAGTGATGAGGTGGAGAAGAACCTGCGCCCATTCTCCACCCTGGACCTGACGTC
CCCCATGCTGGGGGTTGCATCTGAGCACACCAGACAGCTGCTGCTGGAGGGGCCTGTGCGAGTGAAGGAG
GGACGAGAAGGGAAGCTGGACGTGTACCTGTTCCTCTTCTCTGATGTGCTCCTTGTGACCAAGCCCCAGC
GCAAGGCGGACAAAGCCAAGGTCATCCGACCCCCTCTCATGCTGGAGAAGCTCGTGTGCCAACCCCTGCG
AGACCCCAACAGCTTCCTGCTGATCCACCTCACTGAATTCCAGTGTGTCTCCAGCGCCCTCCTTGTGCAC
TGTCCCAGTCCTACAGACCGTGCCCAGTGGCTGGAGAAGACCCAGCAGGCCCAGGCCGCCCTACAGAAGC
TGAAGGCAGAGGAGTATGTTCAACAGAAGAGGGAGCTCCTGACCCTCTATCGGGACCAGGACAGGGAGTC
CCCCAGCACCAGGCCCTCCACGCCTTCCCTGGAGGGCTCTCAGAGCAGCGCAGAGGGGAGGACTCCTGAG
TTCTCGACCATTATCCCCCACCTGGTGGTGACAGAAGACACAGATGAAGATGCTCCCCTTGTGCCAGATG
ATACCTCAGACTCTGGCTACGGCACTTTGATCCCAGGCACCCCCACGGGGTCCCGCTCCCCACTGAGCCG
TCTACGCCAAAGAGCCCTTCGGCGGGACCCTCGCCTCACCTTCTCCACCCTGGAACTCCGGGACATCCCT
CTGCGTCCCCACCCTCCCGACCCCCAAGCTCCTCAACGCCGAAGCGCCCCCGAACTGCCGGAAGGAATCC
TAAAAGGAGGCAGTCTTCCCCAGGAAGACCCACCAACCTGGTCTGAGGAAGAAGATGGGGCCTCCGAGCG
AGGGAATGTGGTGGTGGAAACACTCCACAGGGCCCGGCTTCGGGGCCAGCTTCCCTCCTCCCCAACCCAT
GCTGACTCTGCCGGGGAAAGCCCCTGGGAGTCCTCAGGGGAGGAGGAAGAAGAGGGGCCTCTGTTCCTGA
AAGCTGGCCACACATCCCTGCGCCCAATGCGGGCTGAGGACATGCTCAGAGAGATCCGGGAGGAGCTGGC
CAGCCAAAGGATTGAGGGGGCCGAGGAGCCCCGGGACAGCAGGCCACGGAAGCTGACTCGGGCCCAGCTG
CAGAGGATGCGGGGGCCCCACATCATTCAGCTGGACACCCCTCTGTCCGCATCAGAGGTATGA

Translation (790 aa):
MKAFGPPHEGPLQGLVASRIETYGGRHRASAQSTAGRLYPRGYPVLDPSRRRLQQYVPFARGSGQARGLS
PMRLRDPEPEKRHGGHVGAGLLHSPKLKELTKAHELEVRLHTFSMFGMPRLPPEDRRHWEIGEGGDSGLT
IEKSWRELVPGHKEMSQELCHQQEALWELLTTELIYVRKLKIMTDLLAAGLLNLQRVGLLMEVSAETLFG
NVPSLIRTHRSFWDEVLGPTLEETRASGQPLDPIGLQSGFLTFGQRFHPYVQYCLRVKQTMAYAREQQET
NPLFHAFVQWCEKHKRSGRQMLCDLLIKPHQRITKYPLLLHAVLKRSPEARAQEALNAMIEAVESFLRHI
NGQVRQGEEQESLAAAAQRIGPYEVLEPPSDEVEKNLRPFSTLDLTSPMLGVASEHTRQLLLEGPVRVKE
GREGKLDVYLFLFSDVLLVTKPQRKADKAKVIRPPLMLEKLVCQPLRDPNSFLLIHLTEFQCVSSALLVH
CPSPTDRAQWLEKTQQAQAALQKLKAEEYVQQKRELLTLYRDQDRESPSTRPSTPSLEGSQSSAEGRTPE
FSTIIPHLVVTEDTDEDAPLVPDDTSDSGYGTLIPGTPTGSRSPLSRLRQRALRRDPRLTFSTLELRDIP
LRPHPPDPQAPQRRSAPELPEGILKGGSLPQEDPPTWSEEEDGASERGNVVVETLHRARLRGQLPSSPTH
ADSAGESPWESSGEEEEEGPLFLKAGHTSLRPMRAEDMLREIREELASQRIEGAEEPRDSRPRKLTRAQL
QRMRGPHIIQLDTPLSASEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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