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Report for CCDS6559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6559.1 Public Homo sapiens 9 RPP25L 24 110 108 CCDS HistoryNCBI Gene:138716Re-query CCDS DB by CCDS ID:6559.1Re-query CCDS DB by GeneID:138716See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297613.4 ENSP00000297613.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297613.4Link to Ensembl Protein Viewer:ENSP00000297613.4Re-query CCDS DB by Nucleotide ID:ENST00000297613Re-query CCDS DB by Protein ID:ENSP00000297613
Original member Current member EBI ENST00000378959.9 ENSP00000368242.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378959.9Link to Ensembl Protein Viewer:ENSP00000368242.4Re-query CCDS DB by Nucleotide ID:ENST00000378959Re-query CCDS DB by Protein ID:ENSP00000368242
Original member Current member NCBI NM_148178.3 NP_680544.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_148178.3Link to Protein Sequence:NP_680544.1Re-query CCDS DB by Nucleotide ID:NM_148178Re-query CCDS DB by Protein ID:NP_680544Link to BLAST:NP_680544.1
Original member Current member NCBI NM_148179.3 NP_680545.1 Accepted alive Link to Nucleotide Sequence:NM_148179.3Link to Protein Sequence:NP_680545.1Re-query CCDS DB by Nucleotide ID:NM_148179Re-query CCDS DB by Protein ID:NP_680545Link to BLAST:NP_680545.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_680544.1 163 Q8N5L8 163 100% 0 0
NP_680545.1 163 Q8N5L8 163 100% 0 0

Chromosomal Locations for CCDS 6559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34610805 34611296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGAGCACTACCGGAAAGCTGGCTCTGTAGAGCTCCCAGCGCCTTCCCCAATGCCCCAGCTACCTCCTG
ATACCCTTGAGATGCGGGTCCGAGATGGCAGCAAAATTCGCAACCTGCTGGGGTTGGCTCTGGGTCGGTT
GGAGGGCGGCAGTGCTCGGCATGTAGTGTTCTCAGGTTCTGGCAGGGCTGCAGGAAAGGCTGTCAGCTGC
GCTGAGATTGTCAAGCGGCGGGTCCCAGGCCTGCACCAGCTCACCAAGCTACGTTTCCTTCAGACTGAGG
ACAGCTGGGTCCCAGCCTCACCTGACACAGGGCTAGACCCCCTCACAGTGCGCCGCCATGTGCCTGCAGT
GTGGGTGCTGCTCAGCCGGGACCCCCTGGACCCCAATGAGTGTGGTTACCAACCCCCAGGAGCACCCCCT
GGCCTGGGTTCCATGCCCAGCTCCAGCTGTGGCCCTCGTTCCCGAAGAAGGGCTCGAGACACCCGATCGT
GA

Translation (163 aa):
MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSC
AEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPP
GLGSMPSSSCGPRSRRRARDTRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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