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Report for CCDS48880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48880.1 Public Mus musculus 11 Vezf1 23 108 98 CCDS HistoryNCBI Gene:22344Re-query CCDS DB by CCDS ID:48880.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018521.10 ENSMUSP00000018521.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018521.10Link to Ensembl Protein Viewer:ENSMUSP00000018521.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000018521Re-query CCDS DB by Protein ID:ENSMUSP00000018521
Original member NCBI NM_016686.4 NP_057895.2 Updated not alive Link to Nucleotide Sequence:NM_016686.4Link to Protein Sequence:NP_057895.2Re-query CCDS DB by Nucleotide ID:NM_016686Re-query CCDS DB by Protein ID:NP_057895
Current member NCBI NM_016686.5 NP_057895.2 Accepted alive Link to Nucleotide Sequence:NM_016686.5Link to Protein Sequence:NP_057895.2Re-query CCDS DB by Nucleotide ID:NM_016686Re-query CCDS DB by Protein ID:NP_057895Link to BLAST:NP_057895.2

Chromosomal Locations for CCDS 48880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 88068401 88068433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88073057 88073751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88074662 88074725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88076191 88076374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88078403 88078555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88081398 88081825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGAGGCCAACTGGACCGCGTTCCTGTTCCAGGCCCACGAAGCATCCCATCACCAACAGCAGGCAGCGC
AGAACAGCTTGCTGCCCCTCCTGAGTTCTGCTGTGGAGCCCCCTGATCAGAAACCGTTGCTTCCAATACC
AATTACTCAGAAACCTCAGGCTGCACCAGAAACATTAAAGGATGCCATTGGGATTAAAAAAGAAAAACCC
AAAACTTCGTTTGTGTGCACTTACTGCAGTAAAGCATTCAGGGACAGCTATCACCTGAGGCGCCATCAGT
CCTGCCACACAGGGATCAAGTTGGTGTCTCGGGCAAAGAAAACCCCCACCACGGTGGTTCCCCTTATCTC
CACCATTGCTGGGGACAGCAGCCGAACTTCGTTGGTTTCAACTATTGCAGGCATCTTGTCAACAGTCACT
ACATCTTCCTCGGGCACCAACCCCAGCAGCAGCGCTAGTACCACATCAATGCCTGTGCCCCAGTCTGTCA
AGAAACCCAGTAAGCCTGTCAAGAAGAACCACGCCTGTGAGATGTGTGGGAAGGCCTTCCGGGATGTGTA
CCACCTCAATCGGCACAAGCTCTCCCATTCGGACGAAAAGCCCTTTGAGTGTCCTATTTGTAATCAGCGC
TTCAAGAGGAAGGACCGGATGACTTACCATGTGAGGTCTCATGAAGGAGGCATCACCAAACCCTATACTT
GCAGTGTTTGTGGGAAAGGCTTCTCAAGGCCTGACCACCTAAGCTGTCATGTAAAACATGTGCATTCAAC
AGAAAGACCCTTCAAATGCCAAACGTGCACTGCTGCCTTTGCCACCAAAGACAGACTACGGACACACATG
GTGCGCCACGAAGGCAAGGTATCATGTAACATCTGTGGGAAGCTCTTGAGTGCAGCATATATCACCAGCC
ACTTAAAGACACATGGGCAGAGCCAAAGTATCAACTGTAACACGTGCAAACAAGGCATCAGCAAAACGTG
CATGAGTGAGGAGACCAGCAATCAGAAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAA
CAACATGTGACAAGCTGGCCAGGGAAGCAGGTAGAGACACTGAGACTGTGGGAAGAAGCTGTCAAAGCAA
GAAAGAAAGAAGCTGCCAACCTGTGCCAAACCTCCACGGCTGCTACGACACCAGTGACTCTCACTACTCC
ATTCAATATAACGTCCTCTGTGTCGTCTGGGACTATGTCAAACCCAGTCACAGTGGCAGCTGCAATGAGC
ATGAGAAGTCCAGTAAATGTCTCAAGTGCAGTTAATATAACCAGCCCAATGAACATAGGGCATCCCGTAA
CCATAACCAGCCCCTTAGCCATGACCTCACCTTTAACACTCACCACCCCAGTCAACCTCCCCACCCCTGT
GACCGCCCCAGTGAATATAGCACACCCTGTCACCATCACATCTCCAATGAACCTGCCCACTCCTATGACA
TTAGCTGCCCCTCTCAATATAGCAATGAGGCCTGTAGAAAGTATGCCTTTCTTGCCCCAAGCTTTGCCTA
CGTCACCGCCTTGGTAA

Translation (518 aa):
MEANWTAFLFQAHEASHHQQQAAQNSLLPLLSSAVEPPDQKPLLPIPITQKPQAAPETLKDAIGIKKEKP
KTSFVCTYCSKAFRDSYHLRRHQSCHTGIKLVSRAKKTPTTVVPLISTIAGDSSRTSLVSTIAGILSTVT
TSSSGTNPSSSASTTSMPVPQSVKKPSKPVKKNHACEMCGKAFRDVYHLNRHKLSHSDEKPFECPICNQR
FKRKDRMTYHVRSHEGGITKPYTCSVCGKGFSRPDHLSCHVKHVHSTERPFKCQTCTAAFATKDRLRTHM
VRHEGKVSCNICGKLLSAAYITSHLKTHGQSQSINCNTCKQGISKTCMSEETSNQKQQQQQQQQQQQQQQ
QHVTSWPGKQVETLRLWEEAVKARKKEAANLCQTSTAATTPVTLTTPFNITSSVSSGTMSNPVTVAAAMS
MRSPVNVSSAVNITSPMNIGHPVTITSPLAMTSPLTLTTPVNLPTPVTAPVNIAHPVTITSPMNLPTPMT
LAAPLNIAMRPVESMPFLPQALPTSPPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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