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Report for CCDS27406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27406.1 Public Mus musculus 15 Dap 23 108 98 CCDS HistoryNCBI Gene:223453Re-query CCDS DB by CCDS ID:27406.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044524.15 ENSMUSP00000047186.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044524.15Link to Ensembl Protein Viewer:ENSMUSP00000047186.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000044524Re-query CCDS DB by Protein ID:ENSMUSP00000047186
Original member Current member NCBI NM_146057.3 NP_666169.1 Accepted alive Link to Nucleotide Sequence:NM_146057.3Link to Protein Sequence:NP_666169.1Re-query CCDS DB by Nucleotide ID:NM_146057Re-query CCDS DB by Protein ID:NP_666169Link to BLAST:NP_666169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666169.1 102 Q91XC8 102 100% 0 0

Chromosomal Locations for CCDS 27406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 31224529 31224583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31235773 31235869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31272389 31272431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31273197 31273310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGTCTTCGCCTCCAGAAGGAAAGCTGGAGACCAAAGCTGGACACCCGCCCGCCGTGAAAGCCGGCGGGA
TGCGGATTGTGCAGAAACACCCACATACCGGAGATGGGAAGGAAGAGAGAGACAAGGATGACCAAGAATG
GGAAAGCACCAGCCCACCTAAACCAACAGTGTTCATCTCTGGCGTTATTGCTCGGGGTGACAAAGACTTC
CCTCCAGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTCCATGGACAAACACGTTTCTCCAAGAA
CGCAGCATATCCAACAGCCTCGCAAGTGA

Translation (102 aa):
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDGKEERDKDDQEWESTSPPKPTVFISGVIARGDKDF
PPAAAQVAHQKPHASMDKHVSPRTQHIQQPRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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