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Report for CCDS44362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44362.1 Public Homo sapiens 10 SLC39A12 24 110 108 CCDS HistoryNCBI Gene:221074Re-query CCDS DB by CCDS ID:44362.1Re-query CCDS DB by GeneID:221074See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44362.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377369.7 ENSP00000366586.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377369.7Link to Ensembl Protein Viewer:ENSP00000366586.2Re-query CCDS DB by Nucleotide ID:ENST00000377369Re-query CCDS DB by Protein ID:ENSP00000366586
Original member Current member NCBI NM_001145195.2 NP_001138667.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145195.2Link to Protein Sequence:NP_001138667.1Re-query CCDS DB by Nucleotide ID:NM_001145195Re-query CCDS DB by Protein ID:NP_001138667Link to BLAST:NP_001138667.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138667.1 691 Q504Y0-1 691 100% 0 0

Chromosomal Locations for CCDS 44362.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 17953277 17953537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17961581 17961862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17965483 17965690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17977902 17978074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17981312 17981483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17987479 17987651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17991151 17991303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17993181 17993291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17995656 17995722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18000667 18000825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18003171 18003358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18042705 18042833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGTGCTTCCGGACAAAGCTCTCAGTATCCTGGGTGCCATTGTTTCTTCTACTCAGCCGTGTTTTTTCTA
CTGAGACAGACAAACCCTCAGCCCAGGATAGCAGAAGCCGTGGGAGTTCAGGCCAACCGGCAGACCTGCT
ACAGGTTCTCTCTGCTGGTGACCACCCACCCCACAACCACTCAAGAAGCCTCATCAAAACATTGTTGGAG
AAAACTGGGTGCCCACGGAGGAGAAACGGAATGCAAGGAGATTGCAATCTGTGCTTTGAACCAGATGCAC
TATTACTAATAGCTGGAGGAAATTTTGAAGATCAGCTTAGAGAAGAAGTGGTCCAGAGAGTTTCTCTTCT
CCTTCTCTATTACATTATTCATCAGGAAGAGATCTGTTCTTCAAAGCTCAACATGAGTAATAAAGAGTAT
AAATTTTACCTACACAGCCTACTGAGCCTCAGGCAGGATGAAGATTCCTCTTTCCTTTCACAGAATGAGA
CAGAAGATATCTTGGCTTTCACCAGGCAGTACTTTGACACTTCTCAAAGCCAGTGTATGGAAACCAAAAC
GCTGCAGAAAAAATCTGGAATAGTGAGCAGTGAAGGTGCTAATGAAAGTACGCTTCCTCAGTTGGCAGCC
ATGATCATTACTTTGTCCCTCCAGGGTGTTTGTCTGGGACAAGGAAACTTGCCTTCCCCAGACTACTTTA
CAGAATATATTTTCAGTTCCTTGAATCGTACGAATACCCTCCGCCTATCAGAACTAGACCAACTCCTCAA
CACTCTCTGGACCAGAAGTACTTGTATCAAAAATGAGAAAATCCATCAATTTCAAAGGAAACAAAACAAC
ATAATAACCCATGATCAGGACTATTCTAATTTCTCTTCATCCATGGAAAAAGAGTCTGAGGATGGTCCAG
TTTCCTGGGATCAGACCTGCTTCTCTGCTAGGCAGCTGGTGGAGATATTTCTACAGAAGGGCCTCTCACT
CATTTCTAAGGAGGACTTTAAGCAAATGAGTCCAGGGATCATCCAGCAGCTCCTCAGCTGCTCCTGCCAC
TTACCCAAGGACCAACAAGCAAAGCTGCCACCTACCACTCTGGAGAAATACGGCTACAGCACGGTGGCTG
TCACCCTTCTCACACTGGGCTCCATGCTGGGGACAGCGCTGGTCCTTTTCCATAGCTGTGAGGAGAACTA
CAGGCTTATCTTACAGCTGTTTGTGGGCTTGGCCGTCGGGACACTGTCTGGGGACGCTCTGCTCCACCTT
ATCCCTCAGGTTCTTGGTTTACATAAGCAGGAAGCCCCAGAATTTGGGCATTTCCATGAAAGCAAAGGTC
ATATTTGGAAACTGATGGGATTAATTGGAGGCATCCATGGATTTTTCTTGATAGAAAAATGTTTTATTCT
TCTTGTATCACCAAATGACAAGCAGGGCCTGTCATTGGTTAATGGGCACGTGGGTCATTCCCACCATCTT
GCACTCAACTCTGAATTAAGTGACCAGGCAGGCAGAGGCAAATCTGCTTCAACTATCCAGTTGAAAAGCC
CAGAAGATTCACAGGCAGCTGAAATGCCTATAGGCAGTATGACAGCCTCCAACAGAAAATGTAAAGCCAT
TAGCTTGTTAGCAATCATGATTCTGGTTGGGGACAGCCTGCATAATTTTGCAGATGGCCTAGCCATAGGA
GCAGCCTTCTCATCATCATCCGAGTCAGGAGTGACCACTACGATTGCTATCTTGTGTCATGAAATCCCAC
ATGAAATGGGAGACTTTGCCGTGCTCTTAAGCTCTGGACTTTCTATGAAGACTGCCATCCTGATGAATTT
TATAAGCTCCCTAACTGCCTTCATGGGATTATACATTGGCCTTTCCGTGTCAGCTGATCCATGTGTTCAA
GACTGGATCTTCACAGTCACTGCTGGGATGTTCTTATATTTATCCTTGGTTGAAATGCTTCCTGAAATGA
CTCATGTTCAAACACAACGACCCTGGATGATGTTTCTCCTGCAAAACTTTGGATTGATCCTAGGTTGGCT
TTCTCTCCTGCTCTTGGCTATATATGAGCAAAATATTAAAATATAA

Translation (691 aa):
MCFRTKLSVSWVPLFLLLSRVFSTETDKPSAQDSRSRGSSGQPADLLQVLSAGDHPPHNHSRSLIKTLLE
KTGCPRRRNGMQGDCNLCFEPDALLLIAGGNFEDQLREEVVQRVSLLLLYYIIHQEEICSSKLNMSNKEY
KFYLHSLLSLRQDEDSSFLSQNETEDILAFTRQYFDTSQSQCMETKTLQKKSGIVSSEGANESTLPQLAA
MIITLSLQGVCLGQGNLPSPDYFTEYIFSSLNRTNTLRLSELDQLLNTLWTRSTCIKNEKIHQFQRKQNN
IITHDQDYSNFSSSMEKESEDGPVSWDQTCFSARQLVEIFLQKGLSLISKEDFKQMSPGIIQQLLSCSCH
LPKDQQAKLPPTTLEKYGYSTVAVTLLTLGSMLGTALVLFHSCEENYRLILQLFVGLAVGTLSGDALLHL
IPQVLGLHKQEAPEFGHFHESKGHIWKLMGLIGGIHGFFLIEKCFILLVSPNDKQGLSLVNGHVGHSHHL
ALNSELSDQAGRGKSASTIQLKSPEDSQAAEMPIGSMTASNRKCKAISLLAIMILVGDSLHNFADGLAIG
AAFSSSSESGVTTTIAILCHEIPHEMGDFAVLLSSGLSMKTAILMNFISSLTAFMGLYIGLSVSADPCVQ
DWIFTVTAGMFLYLSLVEMLPEMTHVQTQRPWMMFLLQNFGLILGWLSLLLLAIYEQNIKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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