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Report for CCDS30197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30197.1 Public Mus musculus X Xlr3c 23 108 98 CCDS HistoryNCBI Gene:22446Re-query CCDS DB by CCDS ID:30197.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30197.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080839.1 ENSMUSP00000079651.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080839.1Link to Ensembl Protein Viewer:ENSMUSP00000079651.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000080839Re-query CCDS DB by Protein ID:ENSMUSP00000079651
Original member Current member NCBI NM_011727.2 NP_035857.2 Accepted alive Link to Nucleotide Sequence:NM_011727.2Link to Protein Sequence:NP_035857.2Re-query CCDS DB by Nucleotide ID:NM_011727Re-query CCDS DB by Protein ID:NP_035857Link to BLAST:NP_035857.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035857.2 226 Q61806 226 99.5575% 0 1

Chromosomal Locations for CCDS 30197.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73255372 73255428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73255523 73255618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73257636 73257734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73259093 73259192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73260008 73260125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73261505 73261539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73262423 73262492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73263316 73263421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGTCAAGCAGAAAAAGGAAGGCCACTGACACTGCTGGCAGGCACTCAAGGATGGATCCAAATCTCTCCT
CAGATGACAGCCAGAACCCAGGTGCAGTCGCAGCAGCTAACAGAGAAGTCCTTGATGCTGGTAGGGAGGA
CATTATTTCCTCAGGAACAGAGAGGCAACAGGCCAGGAAGGAAAAACAGGACTTGGTCCAAGAATTCGAA
GAGCCACGTAACAAAGTTCTTCAGGAAAACAGAGAAAAATTCTCAAGGATCATGACCTCATCTTTCAGTG
CCATGGAGGTCAAAATTAAGGATGTTCTGAAAACCCACTGTGAAGAGAGGCAGAAACTTTGTCAGGACTA
TTCTCTTCAGTTTACAAATTTGAATAGGAAGTTAACTTCGGATGCATACAAACTCAAGAAACATGCCGAA
ACACTCTCTAATATGTTTATGGAGCAACAGAAGTTTATTCATGAAAGTCTCACTCTTCAGAAGAACAGAA
TGAAGGAATTTAAATCACTGTGTGAAAAATACTTGGAGAAACTGGAGGTACTGAGGGATTCTCGGGGAAA
TTCCATCGCTGAAGAGCTGAGACGTCTTATAGCCACCTTGGAAATCAAACTTCTGATGCTGCATAACCAG
CAAAAGACTGCTGCTCCTCCACAGTCTCTCCTGGATGTGTTATTCTCATAA

Translation (226 aa):
MSSRKRKATDTAGRHSRMDPNLSSDDSQNPGAVAAANREVLDAGREDIISSGTERQQARKEKQDLVQEFE
EPRNKVLQENREKFSRIMTSSFSAMEVKIKDVLKTHCEERQKLCQDYSLQFTNLNRKLTSDAYKLKKHAE
TLSNMFMEQQKFIHESLTLQKNRMKEFKSLCEKYLEKLEVLRDSRGNSIAEELRRLIATLEIKLLMLHNQ
QKTAAPPQSLLDVLFS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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