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Report for CCDS53425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53425.1 Public Homo sapiens 1 MPZL1 24 110 108 CCDS HistoryNCBI Gene:9019Re-query CCDS DB by CCDS ID:53425.1Re-query CCDS DB by GeneID:9019See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392121.7 ENSP00000375968.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392121.7Link to Ensembl Protein Viewer:ENSP00000375968.3Re-query CCDS DB by Nucleotide ID:ENST00000392121Re-query CCDS DB by Protein ID:ENSP00000375968
Original member Current member NCBI NM_001146191.2 NP_001139663.1 Accepted alive Link to Nucleotide Sequence:NM_001146191.2Link to Protein Sequence:NP_001139663.1Re-query CCDS DB by Nucleotide ID:NM_001146191Re-query CCDS DB by Protein ID:NP_001139663Link to BLAST:NP_001139663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139663.1 119 O95297-5 119 100% 0 0

Chromosomal Locations for CCDS 53425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 167722152 167722242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167765583 167765749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167787820 167787921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGGCAGCGTCCGCCGGAGCCGGGGCGGTGATTGCAGCCCCAGACAGCCGGCGCTGGCTGTGGTCGGTGC
TGGCGGCGGCGCTTGGGCTCTTGACAGCTGGAGTATCAGCCTTGGAAGTATATACGCCAAAAGAAATCTT
CGTGGCAAATGGTACACAAGGGAAGCTGACCTGCAAGTTCAAGTCTACTAGTACGACTGGCGGGTTGACC
TCAGTCTCCTGGAGCTTCCAGCCAGAGGGGGCCGACACTACTGTGTCGGGCCCAGTCATATATGCACAGT
TAGACCACTCCGGCGGACATCACAGTGACAAGATTAACAAGTCAGAGTCTGTGGTGTATGCGGATATCCG
AAAGAATTAA

Translation (119 aa):
MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLT
SVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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