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Report for CCDS29836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29836.1 Public Mus musculus 19 Cox15 23 108 98 CCDS HistoryNCBI Gene:226139Re-query CCDS DB by CCDS ID:29836.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045562.5 ENSMUSP00000041820.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045562.5Link to Ensembl Protein Viewer:ENSMUSP00000041820.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045562Re-query CCDS DB by Protein ID:ENSMUSP00000041820
Original member Current member NCBI NM_144874.4 NP_659123.2 Accepted alive Link to Nucleotide Sequence:NM_144874.4Link to Protein Sequence:NP_659123.2Re-query CCDS DB by Nucleotide ID:NM_144874Re-query CCDS DB by Protein ID:NP_659123Link to BLAST:NP_659123.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659123.2 413 Q8BJ03-1 413 100% 0 0

Chromosomal Locations for CCDS 29836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43736721 43736852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43738037 43738150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43739837 43739991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43741833 43741914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43743617 43743784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43746736 43746922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43748790 43748912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43751344 43751534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43752822 43752911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGCAACGGTTGCTCCTTCCGTCCCTGAGGGCCTTGACGGGGAGCCGCAATGTCGGGCTCCTGGTCCCTA
GGGTGGCGTCCAGAACACAGTGTGGCAGCAGCTGTGGCAGCCAGCGTCCTCTGAGGCCAGGACAGTACAG
CACCATCACTGAAGTGGCTCTGCAATCCGGAAAAGGGACAGTGTCCCTTCCTTCGAGGGCAGCCGAGCGG
GCGGTGGGCCGATGGCTTCTGGTGTGCAGTGGGACAGTGGCTGGAGCAGTTATTCTGGGAGGAGTGACCA
GGTTGACAGAGTCTGGCCTCTCAATGGTAGACTGGCATCTGATAAAGGAGATGAAGCCGCCCACAAGCCA
GGAAGAGTGGGAAGCAGAGTTCCAAAAGTACCAGCAATTTCCAGAATTTAAAATCCTGAACCATGACATG
ACGCTGGCGGAATTCAAGTTTATCTGGTACATGGAATACTCACACCGGATGTGGGGGCGAGCTGTAGGCC
TTGCATACATCCTGCCTGCTGCCTACTTTTGGAGAAAGGGTTGGCTCAACCGTGGCATGAAAGGACGTGT
TCTCGCCCTCTGTGGCTTAGTCTGTTTCCAGGGTCTGTTGGGTTGGTATATGGTGAAAAGTGGATTGGAA
GAAAAACCAGAGTCCTATGACATCCCTCGGGTCAGTCAGTACCGCCTCGCAGCCCACCTGGGGTCAGCAC
TGGTTCTCTACTGTGCCAGTCTGTGGACCTCCCTGTCACTGCTACTGCCTCAGCACAAGTTACCAGAAAC
TCGGCAGCTCCTGTGGTTGAGACGGTTTGCTGGTGGCACAGCAGGCCTGGTGTTCCTCACGGCTCTCTCA
GGGGCTTTTGTGGCAGGGCTGGATGCTGGCCTCGTTTACAACTCCTTCCCCAAAATGGGAGAATCTTGGA
TCCCAGAGGACCTCCTGACCTTCTCCCCTGTCCTGAAGAATGTTTTTGAGAATCCTACCATGGTTCAGTT
TGATCACAGGCTTCTGGGAGTCACGTCTGTCACTGCCATTACAGTGCTCTATTTCCTGTCCCGGAGAATC
CCCCTTCCTCGAAGAACCAAGATGGCAGCAGTGACTCTGCTAGCTTTGGCATATGCACAGGTGGCCCTGG
GCATTAGCACTCTGCTTATGTACGTCCCCACTCCGCTGGCTGCCACACACCAGTCAGGCTCCTTGGCTCT
GCTCAGTGGTGCCCTTTGGCTCATGAATGAACTCCGAAGAGTCCCTAAATAA

Translation (413 aa):
MQRLLLPSLRALTGSRNVGLLVPRVASRTQCGSSCGSQRPLRPGQYSTITEVALQSGKGTVSLPSRAAER
AVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAEFQKYQQFPEFKILNHDM
TLAEFKFIWYMEYSHRMWGRAVGLAYILPAAYFWRKGWLNRGMKGRVLALCGLVCFQGLLGWYMVKSGLE
EKPESYDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPQHKLPETRQLLWLRRFAGGTAGLVFLTALS
GAFVAGLDAGLVYNSFPKMGESWIPEDLLTFSPVLKNVFENPTMVQFDHRLLGVTSVTAITVLYFLSRRI
PLPRRTKMAAVTLLALAYAQVALGISTLLMYVPTPLAATHQSGSLALLSGALWLMNELRRVPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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