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Report for CCDS3007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3007.1 Public Homo sapiens 3 SLC15A2 24 110 108 CCDS HistoryNCBI Gene:6565Re-query CCDS DB by CCDS ID:3007.1Re-query CCDS DB by GeneID:6565See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3007.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000489711.6 ENSP00000417085.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000489711.6Link to Ensembl Protein Viewer:ENSP00000417085.1Re-query CCDS DB by Nucleotide ID:ENST00000489711Re-query CCDS DB by Protein ID:ENSP00000417085
Original member Current member NCBI NM_021082.4 NP_066568.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021082.4Link to Protein Sequence:NP_066568.3Re-query CCDS DB by Nucleotide ID:NM_021082Re-query CCDS DB by Protein ID:NP_066568Link to BLAST:NP_066568.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066568.3 729 Q16348-1 729 100% 0 0

Chromosomal Locations for CCDS 3007.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121894477 121894581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121896406 121896493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121897388 121897529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121911574 121911666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121913021 121913120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121915227 121915317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121915616 121915693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121922220 121922302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121922775 121922861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121923040 121923129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121923222 121923266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121924351 121924383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121924945 121925033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121927758 121927839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121928421 121928555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121928982 121929146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121929302 121929348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121930840 121930950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121931639 121931735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121939349 121939495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121940384 121940488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121940831 121941007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGAATCCTTTCCAGAAAAATGAGTCCAAGGAAACTCTTTTTTCACCTGTCTCCATTGAAGAGGTACCAC
CTCGACCACCTAGCCCTCCAAAGAAGCCATCTCCGACAATCTGTGGCTCCAACTATCCACTGAGCATTGC
CTTCATTGTGGTGAATGAATTCTGCGAGCGCTTTTCCTATTATGGAATGAAAGCTGTGCTGATCCTGTAT
TTCCTGTATTTCCTGCACTGGAATGAAGATACCTCCACATCTATATACCATGCCTTCAGCAGCCTCTGTT
ATTTTACTCCCATCCTGGGAGCAGCCATTGCTGACTCGTGGTTGGGAAAATTCAAGACAATCATCTATCT
CTCCTTGGTGTATGTGCTTGGCCATGTGATCAAGTCCTTGGGTGCCTTACCAATACTGGGAGGACAAGTG
GTACACACAGTCCTATCATTGATCGGCCTGAGTCTAATAGCTTTGGGGACAGGAGGCATCAAACCCTGTG
TGGCAGCTTTTGGTGGAGACCAGTTTGAAGAAAAACATGCAGAGGAACGGACTAGATACTTCTCAGTCTT
CTACCTGTCCATCAATGCAGGGAGCTTGATTTCTACATTTATCACACCCATGCTGAGAGGAGATGTGCAA
TGTTTTGGAGAAGACTGCTATGCATTGGCTTTTGGAGTTCCAGGACTGCTCATGGTAATTGCACTTGTTG
TGTTTGCAATGGGAAGCAAAATATACAATAAACCACCCCCTGAAGGAAACATAGTGGCTCAAGTTTTCAA
ATGTATCTGGTTTGCTATTTCCAATCGTTTCAAGAACCGTTCTGGAGACATTCCAAAGCGACAGCACTGG
CTAGACTGGGCGGCTGAGAAATATCCAAAGCAGCTCATTATGGATGTAAAGGCACTGACCAGGGTACTAT
TCCTTTATATCCCATTGCCCATGTTCTGGGCTCTTTTGGATCAGCAGGGTTCACGATGGACTTTGCAAGC
CATCAGGATGAATAGGAATTTGGGGTTTTTTGTGCTTCAGCCGGACCAGATGCAGGTTCTAAATCCCCTT
CTGGTTCTTATCTTCATCCCGTTGTTTGACTTTGTCATTTATCGTCTGGTCTCCAAGTGTGGAATTAACT
TCTCATCACTTAGGAAAATGGCTGTTGGTATGATCCTAGCATGCCTGGCATTTGCAGTTGCGGCAGCTGT
AGAGATAAAAATAAATGAAATGGCCCCAGCCCAGCCAGGTCCCCAGGAGGTTTTCCTACAAGTCTTGAAT
CTGGCAGATGATGAGGTGAAGGTGACAGTGGTGGGAAATGAAAACAATTCTCTGTTGATAGAGTCCATCA
AATCCTTTCAGAAAACACCACACTATTCCAAACTGCACCTGAAAACAAAAAGCCAGGATTTTCACTTCCA
CCTGAAATATCACAATTTGTCTCTCTACACTGAGCATTCTGTGCAGGAGAAGAACTGGTACAGTCTTGTC
ATTCGTGAAGATGGGAACAGTATCTCCAGCATGATGGTAAAGGATACAGAAAGCAGAACAACCAATGGGA
TGACAACCGTGAGGTTTGTTAACACTTTGCATAAAGATGTCAACATCTCCCTGAGTACAGATACCTCTCT
CAATGTTGGTGAAGACTATGGTGTGTCTGCTTATAGAACTGTGCAAAGAGGAGAATACCCTGCAGTGCAC
TGTAGAACAGAAGATAAGAACTTTTCTCTGAATTTGGGTCTTCTAGACTTTGGTGCAGCATATCTGTTTG
TTATTACTAATAACACCAATCAGGGTCTTCAGGCCTGGAAGATTGAAGACATTCCAGCCAACAAAATGTC
CATTGCGTGGCAGCTACCACAATATGCCCTGGTTACAGCTGGGGAGGTCATGTTCTCTGTCACAGGTCTT
GAGTTTTCTTATTCTCAGGCTCCCTCTAGCATGAAATCTGTGCTCCAGGCAGCTTGGCTATTGACAATTG
CAGTTGGGAATATCATCGTGCTTGTTGTGGCACAGTTCAGTGGCCTGGTACAGTGGGCCGAATTCATTTT
GTTTTCCTGCCTCCTGCTGGTGATCTGCCTGATCTTCTCCATCATGGGCTACTACTATGTTCCTGTAAAG
ACAGAGGATATGCGGGGTCCAGCAGATAAGCACATTCCTCACATCCAGGGGAACATGATCAAACTAGAGA
CCAAGAAGACAAAACTCTGA

Translation (729 aa):
MNPFQKNESKETLFSPVSIEEVPPRPPSPPKKPSPTICGSNYPLSIAFIVVNEFCERFSYYGMKAVLILY
FLYFLHWNEDTSTSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPILGGQV
VHTVLSLIGLSLIALGTGGIKPCVAAFGGDQFEEKHAEERTRYFSVFYLSINAGSLISTFITPMLRGDVQ
CFGEDCYALAFGVPGLLMVIALVVFAMGSKIYNKPPPEGNIVAQVFKCIWFAISNRFKNRSGDIPKRQHW
LDWAAEKYPKQLIMDVKALTRVLFLYIPLPMFWALLDQQGSRWTLQAIRMNRNLGFFVLQPDQMQVLNPL
LVLIFIPLFDFVIYRLVSKCGINFSSLRKMAVGMILACLAFAVAAAVEIKINEMAPAQPGPQEVFLQVLN
LADDEVKVTVVGNENNSLLIESIKSFQKTPHYSKLHLKTKSQDFHFHLKYHNLSLYTEHSVQEKNWYSLV
IREDGNSISSMMVKDTESRTTNGMTTVRFVNTLHKDVNISLSTDTSLNVGEDYGVSAYRTVQRGEYPAVH
CRTEDKNFSLNLGLLDFGAAYLFVITNNTNQGLQAWKIEDIPANKMSIAWQLPQYALVTAGEVMFSVTGL
EFSYSQAPSSMKSVLQAAWLLTIAVGNIIVLVVAQFSGLVQWAEFILFSCLLLVICLIFSIMGYYYVPVK
TEDMRGPADKHIPHIQGNMIKLETKKTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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