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Report for CCDS25120.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25120.2 Public Mus musculus 11 Omg 23 108 98 CCDS HistoryNCBI Gene:18377Re-query CCDS DB by CCDS ID:25120.2Re-query CCDS DB by GeneID:18377See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25120.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25120.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164465.2 ENSMUSP00000132918.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164465.2Link to Ensembl Protein Viewer:ENSMUSP00000132918.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164465Re-query CCDS DB by Protein ID:ENSMUSP00000132918
Original member Current member NCBI NM_019409.2 NP_062282.2 Accepted alive Link to Nucleotide Sequence:NM_019409.2Link to Protein Sequence:NP_062282.2Re-query CCDS DB by Nucleotide ID:NM_019409Re-query CCDS DB by Protein ID:NP_062282Link to BLAST:NP_062282.2

Chromosomal Locations for CCDS 25120.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 79501699 79503027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79503903 79503905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGCTTTGATGGAATATCAGATACTGAAAATGTCTTCCTGCCTGTTCATCCTTCTGTTTCTCACGCCTG
GCATCTTATGCATTTGTCCTCTCCAGTGTACATGCACAGAGAGGCACAGGCATGTGGACTGTTCAGGCAG
AAACTTGACTACATTACCACCTGGACTGCAGGAGAACATTATACATTTAAACCTGTCTTATAACCACTTT
ACTGATCTGCATAACCAGTTAACCCCATATACCAATCTGAGAACCCTGGATATTTCAAACAACAGGCTTG
AAAGTCTGCCTGCTCAGTTACCTCGGTCTCTCTGGAACATGTCTGCTGCTAACAACAATATTAAACTTCT
TGACAAATCTGATACTGCTTATCAGTGGAACCTTAAATACCTGGATGTTTCTAAGAATATGCTGGAAAAG
GTTGTTCTCATTAAAAATACCCTAAGAAGTCTCGAGGTTCTTAACCTCAGCAGTAACAAGCTTTGGACAG
TTCCAACCAACATGCCTTCCAAACTGCATATCGTGGACCTGTCTAATAACTCACTGACACAAATCCTTCC
AGGGACATTAATAAACCTGACAAATCTCACACATCTTTACCTGCACAACAATAAATTCACATTCATTCCA
GAACAGTCTTTTGACCAACTTTTGCAGTTGCAAGAGATAACTCTTCATAATAACAGGTGGTCATGTGACC
ATAAACAAAACATTACTTACTTATTGAAGTGGGTGATGGAAACGAAAGCCCATGTGATAGGGACTCCTTG
TTCTAAGCAAGTATCCTCTCTAAAGGAACAGAGCATGTACCCCACACCTCCTGGGTTTACCTCAAGCTTA
TTTACTATGAGTGAGATGCAGACAGTGGACACCATTAACTCTTTGAGTATGGTAACTCAACCCAAAGTGA
CCAAAACACCCAAACAATATCGAGGAAAGGAAACCACATTTGGTGTCACTCTAAGCAAAGATACCACTTT
TAGTAGCACTGATAGGGCTGTGGTGGCCTACCCAGAAGACACACCCACAGAAATGACCAATTCCCATGAA
GCAGCAGCTGCAACTCTAACTATTCACCTCCAGGATGGAATGAGTTCAAATGCAAGCCTCACCAGTGCAA
CAAAGTCACCCCCAAGCCCCGTGACCCTCAGCATAGCTCGTGGCATGCCAAATAACTTCTCTGAAATGCC
TCGACAAAGCACAACCCTCAACTTACGGAGGGAAGAAACCACTGCAAATGGAAACACTCGGCCACCTTCT
GCGGCTAGTGCTTGGAAAGTAAATGCCTCGCTCCTTTTAATGCTCAATGCTGTGGTCATGCTGGCAGGCT
GA

Translation (443 aa):
MALMEYQILKMSSCLFILLFLTPGILCICPLQCTCTERHRHVDCSGRNLTTLPPGLQENIIHLNLSYNHF
TDLHNQLTPYTNLRTLDISNNRLESLPAQLPRSLWNMSAANNNIKLLDKSDTAYQWNLKYLDVSKNMLEK
VVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHIVDLSNNSLTQILPGTLINLTNLTHLYLHNNKFTFIP
EQSFDQLLQLQEITLHNNRWSCDHKQNITYLLKWVMETKAHVIGTPCSKQVSSLKEQSMYPTPPGFTSSL
FTMSEMQTVDTINSLSMVTQPKVTKTPKQYRGKETTFGVTLSKDTTFSSTDRAVVAYPEDTPTEMTNSHE
AAAATLTIHLQDGMSSNASLTSATKSPPSPVTLSIARGMPNNFSEMPRQSTTLNLRREETTANGNTRPPS
AASAWKVNASLLLMLNAVVMLAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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