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Report for CCDS23479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23479.1 Public Mus musculus 9 Pcbp4 23 108 98 CCDS HistoryNCBI Gene:59092Re-query CCDS DB by CCDS ID:23479.1Re-query CCDS DB by GeneID:59092See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024260.13 ENSMUSP00000024260.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024260.13Link to Ensembl Protein Viewer:ENSMUSP00000024260.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024260Re-query CCDS DB by Protein ID:ENSMUSP00000024260
Original member Current member NCBI NM_021567.5 NP_067542.3 Accepted alive Link to Nucleotide Sequence:NM_021567.5Link to Protein Sequence:NP_067542.3Re-query CCDS DB by Nucleotide ID:NM_021567Re-query CCDS DB by Protein ID:NP_067542Link to BLAST:NP_067542.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067542.3 403 P57724 403 99.7519% 0 1

Chromosomal Locations for CCDS 23479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106460069 106460149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106460276 106460299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106460397 106460429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106460651 106460767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106460993 106461124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106461265 106461393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106461849 106461923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106462069 106462113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106462189 106462252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106462362 106462414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106462508 106462677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106463131 106463419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGAGCAGTTCAGATGCGGGGCTGGAGGAGGGGCCCGAGCTTAGTATCACCCTCACCCTGCGGATGCTGA
TGCACGGGAAGGAAGTGGGCAGCATCATTGGGAAGAAGGGAGAGACTGTAAAGCGAATCCGGGAACAGAG
CAGTGCCCGGATCACCATCTCGGAGGGCTCCTGCCCCGAGCGAATCACCACCATCACAGGCTCTACGGCT
GCCGTCTTCCACGCGGTCTCCATGATTGCCTTCAAGCTGGATGAGGACCTTTGTGCTGCTCCTGCAAATG
GTGGCAGTGTCTCCAGACCTCCAGTGACCTTGCGCCTTGTCATCCCTGCCAGCCAGTGTGGATCACTGAT
TGGGAAGGCAGGCACCAAAATCAAGGAGATCCGAGAGACTACAGGAGCCCAGGTGCAGGTGGCAGGGGAC
CTGCTCCCAAATTCCACAGAGCGTGCTGTCACTGTGTCCGGGGTGCCTGACGCCATCATCCTGTGTGTGC
GCCAGATCTGTGCTGTTATTCTGGAGTCCCCACCCAAAGGAGCCACAATCCCGTATCATCCGAGCCTCTC
CCTAGGTACTGTCCTCCTCTCGGCCAACCAGGGTTTCTCTGTCCAGGGTCAGTATGGAGCAGTGACCCCT
GCAGAGGTCACCAAGCTCCAGCAGCTCTCAGGCCACGCCGTTCCCTTTGCATCACCCAGTGTGGTGCCAG
GACTGGATCCCAGCACACAGACCAGCTCACAGGAGTTTCTGGTTCCCAATGATCTGATTGGCTGTGTGAT
CGGACGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCGGGGGCACATATTAAGATCGGGAACCAA
GCGGAGGGTGCTGGGGAGCGGCATGTGACCATCACTGGCTCACCGGTCTCCATCGCCCTGGCTCAGTACC
TCATCACTGCCTGTCTAGAGACGGCCAAGTCTACCTCTGGGGGGACGCCTGGCTCAGCCCCCGCAGACCT
GCCCACCCCTTTCTCGCCACCCCTGACGGCCCTGCCCACAGCTCCCCCAGGCCTGCTGGGCACACCTTAT
GCCATCTCCCTCTCCAACTTCATCGGCCTCAAGCCTGTGCCCTTCCTGGCTCTACCACCTGCTTCCCCAG
GGCCACCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCCAATGGGAGCAAGAAAGCTGAACG
GCAGAAATTCTCCCCCTACTGA

Translation (403 aa):
MSSSDAGLEEGPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTA
AVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD
LLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP
AEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ
AEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPTPFSPPLTALPTAPPGLLGTPY
AISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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