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Report for CCDS37044.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37044.2 Public Mus musculus 15 Zfr 23 108 98 CCDS HistoryNCBI Gene:22763Re-query CCDS DB by CCDS ID:37044.2See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 37044.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37044.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122941.7 ENSMUSP00000118911.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122941.7Link to Ensembl Protein Viewer:ENSMUSP00000118911.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122941Re-query CCDS DB by Protein ID:ENSMUSP00000118911
Original member Current member NCBI NM_011767.2 NP_035897.2 Accepted alive Link to Nucleotide Sequence:NM_011767.2Link to Protein Sequence:NP_035897.2Re-query CCDS DB by Nucleotide ID:NM_011767Re-query CCDS DB by Protein ID:NP_035897Link to BLAST:NP_035897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035897.2 1074 O88532 1074 100% 0 0

Chromosomal Locations for CCDS 37044.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 12117911 12117947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12118239 12118338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12136396 12136678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12137905 12138049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12140434 12140652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12146149 12146396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12149528 12149719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12150173 12150464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12152801 12152997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12154446 12154565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12156263 12156408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12159599 12159761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12160485 12160690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12162114 12162264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12166145 12166286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12170816 12170913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12171759 12171854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12180622 12180733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12180843 12180940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12183959 12184138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGATTCCCATATGCCCTGTAGTTTCTTTCACCTATGTGCCCAGCCGGCTGGGGGAAGATGCCAAAATGG
CGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAGCCA
GCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCA
GTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTC
CAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCATATGGAGGCTACCCCACTGCACACACAGCAACCGA
CTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
GACTCATATTCGTATGTAAGATCCACAGCCCCTGCTGTAGCTTATGATAGTAAGCAGTACTACCAACAGC
CAACAGCAACTGCTGCTGCTGTAGCTGCTGCTGCCCAGCCTCAGCCTTCTGTTGCTGAAACCTACTATCA
GACAGCCCCTAAAGCAGGTTATAGCCAAGGTGCAACACAGTATACTCAAGCGCAGCAAGCTCGGCAAGTG
ACAGCCATAAAACCAGCCACACCAAGTCCAGCTACCACTACTTTCTCCATTTATCCTGTGTCCTCCACTG
TACAACCGGTGGCAGCTGCAGCTACTGTGGTACCATCCTATACTCAGAGTGCTACTTACAGTACCACAGC
AGTTACTTATTCTGGTACATCTTATTCAGGTTATGAAGCAGCCGTATATTCAGCTGCGTCTTCCTACTAC
CAACAGCAGCAGCAACAACAGAAGCAAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAACAGCTGCCTGGA
CAGGGACCACCTTTACTAAAAAAACACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACC
ACCCCAGATTCATTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAGACTTATAAAGAGCACTTA
GAAGGACAGAAACATAAAAAAAAGGAAGCCGCATTGAAAGCCTCTCAAAATACCAGCAGCAGCAACAACT
CAACTCGTGGGACACAAAATCAGCTACGTTGCGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATA
TGCTGCCCACATTCGTGGTGCTAAGCATCAGAAAGTGGTTAAATTACACACAAAACTTGGTAAACCTATT
CCTTCAACGGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGCATCTGCTTCAAAACCAACTG
CCTCTCCTTCAAGTATTGGCGCAAGCAATTGTACTCTGAACACGTCATCAATTGCAACTTCTTCAGTGAA
AGGTCTTTCAACTACAGGAAACTCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGATACCTACC
AATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTGGTGGAAATAAGCTACAGTCAACAG
GAAATAAAACGGAAGACTTAAAAGGAATTGACTGTGTTAAGAATACTCCTGCTGCCTCTGCTGTGCAGAT
TCCAGAAGTAAAGCAAGATGCAGGGTCAGAACCAGTCACACCTGCGTCCCTTGCTGCTCTGCAGAGTGAT
GTACAACCAGTGGGACATGATTATGTTGAAGAGGTACGAAATGATGAAGGAAAAGTCATTCGCTTCCATT
GTAAATTATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAAGGACGAAGACATAG
ACTTCAGTATAAAAAAAAAGTAAATCCAGATTTGCAAGTAGAAGTGAAGCCCAGTATTCGTGCCAGAAAA
ATTCAAGAAGAGAAAATGAGAAAGCAAATGCAGAAGGAGGAATATTGGCGGAGACGAGAAGAGGAGGAAC
GCTGGAGGATGGAGATAAGACGTTATGAAGAAGACATGTACTGGAGAAGAATGGAGGAAGAGCAGCATCA
TTGGGATGATCGCAGACGAATGCCTGATGGCGGCTATCCTCATGGTCCTCCCGGCCCACTAGGTCTTTTG
GGAGTCCGACCAGGCATGCCTCCCCAGCCGCAGGGTCCTGCCCCCTTACGGCGTCCTGACTCATCTGATG
ATCGTTATGTAATGACAAAGCATGCAACTATTTATCCAACTGAAGAAGAGTTACAAGCCGTCCAGAAAAT
TGTTTCTATCACTGAGCGTGCTTTAAAGCTTGTTTCAGACAGTTTGTCGGAACATGAGAAGAGCAAGAAC
AAAGAGGGAGATGATAAGAAAGAGGGAGGTAAAGACAGAGCTCTGAAAGGGGTGTTGCGAGTAGGCGTGC
TGGCAAAAGGATTACTTCTCCGAGGAGACAGGAATGTCAACCTTGTTTTGCTGTGCTCAGAAAAACCTTC
AAAGTCGTTATTAAGCCGTATTGCAGAAAACCTACCCAAACAGCTTGCTGTTATAAGTCCTGAGAAGTAT
GACATAAAATGTGCCGTGTCTGAGGCAGCGATAATTTTGAACTCGTGTGTGGAGCCCAAAATGCAAGTCA
CTATCACCCTGACATCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAGATGTAACCTCGGGTATGGT
GAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAG
TGGTTCCAGGCTAGAGCTAATGGCCTACAGTCGTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTC
AACGAGTTCCAACGTGGTCTGATTTTCCTAGCTGGGCTATGGAGTTACTGGTGGAGAAGGCAATTAGCAG
TGCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATT
CTCAAAGGCAGCCCTGGACTTCTGGACCCTTGTGAAAAGGATCCCTTTGACACTTTGGCAACAATGACTG
ACCAACAGCGTGAAGACATTACATCCAGTGCACAGTTTGCATTGAGACTCCTTGCATTCCGTCAGATACA
CAAAGTTCTGGGGATGGATCCATTACCACAAATGAATCAGCGCTTTAACATCCACAACAACAGGAAACGA
AGAAGGGATAGTGATGGAGTGGATGGATTTGAAGCTGAGGGGAAGAAAGACAAAAAGGATTATGATAACT
TTTAA

Translation (1074 aa):
MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASYTVHQAP
VAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQ
DSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQAQQARQV
TAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYSGTSYSGYEAAVYSAASSYY
QQQQQQQKQAAAAAAAAAATAAWTGTTFTKKTPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHL
EGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPI
PSTEPNVVSQATSSTAASASKPTASPSSIGASNCTLNTSSIATSSVKGLSTTGNSSLNSTSNTKVSAIPT
NMAAKKTSTPKINFVGGNKLQSTGNKTEDLKGIDCVKNTPAASAVQIPEVKQDAGSEPVTPASLAALQSD
VQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARK
IQEEKMRKQMQKEEYWRRREEEERWRMEIRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLL
GVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKN
KEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPEKY
DIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAK
WFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGII
LKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMNQRFNIHNNRKR
RRDSDGVDGFEAEGKKDKKDYDNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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