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Report for CCDS15873.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15873.2 Public Mus musculus 2 Spout1 23 108 98 CCDS HistoryNCBI Gene:227695Re-query CCDS DB by CCDS ID:15873.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15873.1
The coding region has been updated to represent a better supported 5' splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15873.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100220.4 ENSMUSP00000097793.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100220.4Link to Ensembl Protein Viewer:ENSMUSP00000097793.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100220Re-query CCDS DB by Protein ID:ENSMUSP00000097793
Original member Current member NCBI NM_172660.4 NP_766248.3 Accepted alive Link to Nucleotide Sequence:NM_172660.4Link to Protein Sequence:NP_766248.3Re-query CCDS DB by Nucleotide ID:NM_172660Re-query CCDS DB by Protein ID:NP_766248Link to BLAST:NP_766248.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766248.3 385 Q3UHX9-1 385 100% 0 0

Chromosomal Locations for CCDS 15873.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30174093 30174185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30174922 30175069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30175187 30175289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30175714 30175812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30175919 30175991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30176362 30176492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30176615 30176664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30176739 30176828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30177323 30177482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30177593 30177721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30177920 30177965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30178390 30178425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCGGAGCGCCCGAGGAAGCGTCCGTGTGGTCCGGGTGAACATGGCCAAAGGGTTGAATGGCGAAAAT
GGAAACAGCAGAAAAAAGAGGAGAAAAAGAAGTGGAAGGACCTCAAGATAATGAAGAAACTGGAGCGGCA
GCGTGCCCAAGAGGAAGAGGCTAAACGCCAGGAAGAGGAGGAAGAGGCGGCGGCCCAGAGGAGCAACCAA
GGACGGCCTTACACTCTGAGTGTGGCCCTGCCAGGCTCCATCCTGGACAATGCCCAGTCACCTGAGCTCC
GCACCTACCTGGCTGGCCAGATCGCCAGAGCCTGCACCATCTTCTGTGTGGATGAGATTGTGGTGTTCGA
TGAGGAGGGCCAAGATACCAAGAGTGTGGAAGGAGAATTCAGGGGAGTTGGCAAGAAAGGGCAGGCATGT
GTCCAGCTGGCCCGCATCCTACAGTACCTGGAGTGTCCACAGTACCTGAGAAAGGCGTTCTTCCCCAAGC
ACCAAGATCTGCAGTTTGCAGGAATCCTCAACCCCTTGGACAGCCCTCACCACATGCGTCAGGACGAAGA
GTCTGAGTTTCGAGAAGGCGTCGTGGTGGACCGGCCCACCAAGGCAGGCCATGGCTCTTTGGTCAACTGT
GGAATGAAGAAGGAGGTGAAGATTGACAAGAAACTGGACCCTGGACTTCGGGTGACCGTGCGACTGAACC
AGCAGCAGCTCCCAGAATGCAAGACATACAAAGGAACAGTTGTGTCATCACAGGACCCCCGCACCAAAGC
TGGTCTCTACTGGGGCTACACTGTCCGGCTGGCCTCTTGCCTCAGCGCTGTGTTTGCTGAGGCTCCCTTC
CAGGATGGGTACGACCTGACCATTGGGACATCAGAACGTGGCTCCGACGTGGCCTCTGCCCAGCTGCCCA
GCTTCAGGCATGCCCTTGTGGTGTTTGGAGGCCTCCAAGGGCTAGAAGCTGCAGTGGATGCTGACCCGAA
CCTTGAAGTGGCTGACCCCAGTGTCCTCTTCGACTTCTATGTCAACACATGCCTTAGCCAGGGCAGCCGT
ACCATCCGCACCGAGGAGGCCATACTCATCTCGCTGGCTGCTCTGCAGCCTGGTCTCACCCAGGTGGGAT
CGAGGCCCGCCTCCCCGCTTTCTGGACCCAGGATGTAG

Translation (385 aa):
MAERPRKRPCGPGEHGQRVEWRKWKQQKKEEKKKWKDLKIMKKLERQRAQEEEAKRQEEEEEAAAQRSNQ
GRPYTLSVALPGSILDNAQSPELRTYLAGQIARACTIFCVDEIVVFDEEGQDTKSVEGEFRGVGKKGQAC
VQLARILQYLECPQYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEFREGVVVDRPTKAGHGSLVNC
GMKKEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPF
QDGYDLTIGTSERGSDVASAQLPSFRHALVVFGGLQGLEAAVDADPNLEVADPSVLFDFYVNTCLSQGSR
TIRTEEAILISLAALQPGLTQVGSRPASPLSGPRM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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