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Report for CCDS16740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16740.1 Public Mus musculus 2 Cpxm1 23 108 98 CCDS HistoryNCBI Gene:56264Re-query CCDS DB by CCDS ID:16740.1Re-query CCDS DB by GeneID:56264See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16740.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028897.7 ENSMUSP00000028897.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028897.7Link to Ensembl Protein Viewer:ENSMUSP00000028897.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028897Re-query CCDS DB by Protein ID:ENSMUSP00000028897
Original member Current member NCBI NM_019696.2 NP_062670.2 Accepted alive Link to Nucleotide Sequence:NM_019696.2Link to Protein Sequence:NP_062670.2Re-query CCDS DB by Nucleotide ID:NM_019696Re-query CCDS DB by Protein ID:NP_062670Link to BLAST:NP_062670.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062670.2 722 Q9Z100 722 100% 0 0

Chromosomal Locations for CCDS 16740.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130390904 130391142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130391238 130391340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130393071 130393210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130393384 130393681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130393766 130393945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130394032 130394228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130394310 130394433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130394737 130394825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130394922 130395072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130395636 130395723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130395829 130395968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130396108 130396217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130396331 130396492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130397359 130397506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGTGGGGTCTCTTGCTCGCAGTGACCGCCTTTGCGCCTTCCGTCGGTCTGGGGCTGGGGGCTCCCAGCG
CCTCAGTGCCGGGCCTGGCGCCGGGCTCAACCCTGGCTCCACACAGCAGCGTTGCACAGCCGTCCACAAA
GGCAAATGAGACCTCAGAACGGCATGTCCGGCTTCGAGTCATCAAGAAAAAAAAGATCGTTGTCAAGAAG
CGAAAGAAGCTAAGGCACCCTGGTCCCTTGGGGACTGCTAGGCCTGTGGTGCCCACTCACCCAGCAAAGA
CCCTCACTCTCCCTGAGAAACAAGAACCAGGATGTCCCCCTCTAGGCTTGGAGTCCTTGAGGGTTTCAGA
TAGCCAGCTGGAGGCCTCCAGCAGCCAGTCCTTTGGTCTTGGAGCACACCGAGGACGGCTCAATATCCAG
TCAGGTCTGGAGGACGGTGACCTGTATGATGGCGCTTGGTGCGCTGAGCAACAAGACACTGAACCTTGGC
TTCAGGTGGATGCAAAGAATCCCGTCCGCTTCGCAGGAATTGTTACACAGGGCAGAAACTCTGTGTGGAG
GTATGACTGGGTCACATCATTCAAGGTCCAGTTCAGCAATGACAGCCAGACCTGGTGGAAGAGTAGGAAC
AGTACTGGAATGGACATAGTATTTCCTGCCAATTCAGACGCAGAGACCCCAGTGTTGAACCTTCTGCCAG
AGCCTCAGGTGGCTCGATTCATTCGCCTGCTGCCTCAGACCTGGTTTCAGGGAGGTGCACCTTGCCTCCG
GGCAGAGATCCTGGCCTGCCCAGTCTCAGATCCTAATGACCTGTTCCCTGAGGCCCACACACTGGGATCT
TCGAACTCTTTGGACTTCCGGCATCACAATTATAAAGCTATGAGAAAGCTGATGAAACAGGTGAATGAGC
AGTGCCCCAACATCACGCGCATCTACAGCATCGGGAAGAGCCACCAGGGTTTGAAGCTGTATGTGATGGA
AATGTCAGACCATCCTGGGGAGCATGAGCTGGGCGAGCCCGAGGTCCGCTACGTGGCTGGAATGCATGGG
AATGAGGCCCTGGGGCGGGAGTTGCTTCTGCTTTTGATGCAGTTCTTATGCCATGAGTTCCTGCGAGGGG
ACCCGAGAGTGACTCGGCTGCTCACTGAGACACGAATCCATCTATTGCCCTCCATGAATCCTGATGGCTA
TGAGACTGCCTACCACAGGGGCTCAGAGCTGGTGGGCTGGGCAGAGGGCCGCTGGACCCACCAGGGCATT
GACCTTAACCACAATTTTGCTGACCTCAACACACAACTGTGGTATGCAGAGGATGATGGACTGGTACCCG
ACACTGTCCCCAACCATCACCTGCCACTGCCTACCTACTATACATTGCCCAATGCCACCGTGGCTCCTGA
AACGTGGGCAGTGATCAAATGGATGAAGCGCATCCCGTTTGTGCTGAGTGCCAACCTCCATGGGGGCGAG
CTTGTGGTGTCCTATCCTTTCGACATGACTCGGACTCCGTGGGCTGCTCGTGAACTCACTCCCACACCAG
ATGATGCTGTCTTCCGCTGGCTCAGCACTGTCTATGCTGGCACGAATAGGGCCATGCAGGATACCGACCG
CCGACCTTGTCATAGCCAGGACTTCTCCTTGCATGGCAACGTCATCAATGGAGCCGACTGGCACACAGTT
CCTGGGAGCATGAACGACTTCAGCTACCTACACACCAATTGCTTTGAGGTCACAGTGGAGCTGTCCTGTG
ACAAGTTCCCTCATGAGAAGGAGCTGCCTCAGGAGTGGGAAAACAACAAAGATGCTCTTCTCACCTACCT
GGAGCAGGTGCGCATGGGCATTACTGGAGTTGTCCGGGATAAAGACACAGAGCTCGGCATTGCGGATGCT
GTCATTGCCGTGGAGGGCATTAACCACGATGTTACAACAGCTTGGGGCGGAGATTACTGGCGGCTGCTGA
CACCTGGGGACTATGTGGTGACAGCCAGTGCTGAGGGTTACCATACAGTCAGACAACACTGTCAGGTCAC
CTTTGAAGAGGGCCCTGTTCCCTGCAATTTCCTACTCACCAAGACTCCCAAAGAGAGGCTTCGAGAACTG
TTGGCAACACGAGGGAAGTTGCCCCCAGACCTTCGGAGGAAGCTGGAGCGGCTGAGGGGACAGAAGTAA

Translation (722 aa):
MWGLLLAVTAFAPSVGLGLGAPSASVPGLAPGSTLAPHSSVAQPSTKANETSERHVRLRVIKKKKIVVKK
RKKLRHPGPLGTARPVVPTHPAKTLTLPEKQEPGCPPLGLESLRVSDSQLEASSSQSFGLGAHRGRLNIQ
SGLEDGDLYDGAWCAEQQDTEPWLQVDAKNPVRFAGIVTQGRNSVWRYDWVTSFKVQFSNDSQTWWKSRN
STGMDIVFPANSDAETPVLNLLPEPQVARFIRLLPQTWFQGGAPCLRAEILACPVSDPNDLFPEAHTLGS
SNSLDFRHHNYKAMRKLMKQVNEQCPNITRIYSIGKSHQGLKLYVMEMSDHPGEHELGEPEVRYVAGMHG
NEALGRELLLLLMQFLCHEFLRGDPRVTRLLTETRIHLLPSMNPDGYETAYHRGSELVGWAEGRWTHQGI
DLNHNFADLNTQLWYAEDDGLVPDTVPNHHLPLPTYYTLPNATVAPETWAVIKWMKRIPFVLSANLHGGE
LVVSYPFDMTRTPWAARELTPTPDDAVFRWLSTVYAGTNRAMQDTDRRPCHSQDFSLHGNVINGADWHTV
PGSMNDFSYLHTNCFEVTVELSCDKFPHEKELPQEWENNKDALLTYLEQVRMGITGVVRDKDTELGIADA
VIAVEGINHDVTTAWGGDYWRLLTPGDYVVTASAEGYHTVRQHCQVTFEEGPVPCNFLLTKTPKERLREL
LATRGKLPPDLRRKLERLRGQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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