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Report for CCDS17135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17135.1 Public Mus musculus 2 Tfap2c 23 108 98 CCDS HistoryNCBI Gene:21420Re-query CCDS DB by CCDS ID:17135.1Re-query CCDS DB by GeneID:21420See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030391.8 ENSMUSP00000030391.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030391.8Link to Ensembl Protein Viewer:ENSMUSP00000030391.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030391Re-query CCDS DB by Protein ID:ENSMUSP00000030391
Original member Current member NCBI NM_009335.2 NP_033361.2 Accepted alive Link to Nucleotide Sequence:NM_009335.2Link to Protein Sequence:NP_033361.2Re-query CCDS DB by Nucleotide ID:NM_009335Re-query CCDS DB by Protein ID:NP_033361Link to BLAST:NP_033361.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033361.2 449 Q61312 449 100% 0 0

Chromosomal Locations for CCDS 17135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172549835 172549882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172551407 172551889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172551996 172552047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172553416 172553632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172554041 172554159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172556065 172556209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172557091 172557376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGTTGTGGAAAATAACAGATAATGTCAAGTATGAAGAGGATTGCGAGGATCGCCACGACTCGAGCAGTA
ATGGCAACCCTCGCATCCCTCACCTCTCCTCTCCGGGACAACATCTCTACAGTCCCGCGCCGCCTCTCTC
GCACACCGGGGTTGCAGAGTACCAGCCGCCTCCTTACTTCCCGCCGCCTTACCAGCAGCTGGCATACTCG
CAGTCCGCCGACCATTACTCGCATCTGGGAGAGGCTTACGCTGCCGCCATGAACCCCCTGCACCAGCCTG
CGGCCACCGGCAGCCAGCAACAGGCCTGGCCGGGTCGACAGAGTCAGGAGGGCTCTAGCCTGGCCTCGCA
CCACAGCCGCTCTGCAAGTCTAATACCCCATATTTCAGGGCTGGAGGGGGGCTCGGTGAGCGCCCGGCGG
GAAGTCTACCGCCGGTCCGACCTGCTGCTGCCTCACGCGCACGCCCTGGAAGCCGGCCTGGCTGAGAACC
TGGGGCTGCACGAGATGGCTCACCCCATAGAGGAGGTGCAGAATGTGGACGACGCGCACTTGCTCCTACA
CGATCAGACTGTCATTCGCAAAGGACCCATTTCGATGACCAAGAACCCTTTGGGGCTCCCTTGCCAGAAG
GACCTGGTGGGAGTGGTCATGAACCCCAGTGAGGTCTTCTGCTCGGTCCCTGGAAGACTGTCCCTGCTCA
GCTCCACGTCGAAGTACAAAGTAACTGTGGCTGAGGTACAGAGGCGACTGTCACCACCGGAATGCCTAAA
CGCCTCGCTCCTGGGAGGTGTGCTCAGAAGAGCAAAGTCCAAAAATGGAGGCCGGTCCTTGAGGGAGAAG
TTGGACAAAATTGGATTGAACCTTCCGGCCGGGAGACGGAAAGCTGCCCACGTCACTCTCCTCACGTCTC
TCGTGGAAGGTGAAGCCGTCCACCTAGCACGGGACTTCGCCTATGTCTGCGAAGCTGAGTTCCCTAGTAA
AGCGGTGGCTGACTATTTAACGAGACCACATCTTGGGGGACGGAATGAGATGGCCACGCGGAAGAGTATG
TTGTTGGCTGCACAGCAGGTGTGCAAGGAGTTCACTGACCTTCTCCATCAAGATCGGACACCCAACGGGA
ACAACAGGCCCGCCCAGGTCTTGGAGCCGAACATACAAAACTGTTTGTCTCATTTCAGCCTGATAACTCA
TGGCTTTGGCAGCCAGGCCATCTGTGCGGCGGTCTCCGCAGTGCAGAATTATATCAAGGAGGCTCTAATC
GCCATCGATAAGTCCTACATGAACCCGGGGGACCAGAGTCCGGCTGATTCCAGCAAGACGATGGAGAAAA
TGGAAAAGCACAGGAAGTAA

Translation (449 aa):
MLWKITDNVKYEEDCEDRHDSSSNGNPRIPHLSSPGQHLYSPAPPLSHTGVAEYQPPPYFPPPYQQLAYS
QSADHYSHLGEAYAAAMNPLHQPAATGSQQQAWPGRQSQEGSSLASHHSRSASLIPHISGLEGGSVSARR
EVYRRSDLLLPHAHALEAGLAENLGLHEMAHPIEEVQNVDDAHLLLHDQTVIRKGPISMTKNPLGLPCQK
DLVGVVMNPSEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREK
LDKIGLNLPAGRRKAAHVTLLTSLVEGEAVHLARDFAYVCEAEFPSKAVADYLTRPHLGGRNEMATRKSM
LLAAQQVCKEFTDLLHQDRTPNGNNRPAQVLEPNIQNCLSHFSLITHGFGSQAICAAVSAVQNYIKEALI
AIDKSYMNPGDQSPADSSKTMEKMEKHRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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