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Report for CCDS20913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20913.1 Public Mus musculus 7 Nectin2 23 108 98 CCDS HistoryNCBI Gene:19294Re-query CCDS DB by CCDS ID:20913.1Re-query CCDS DB by GeneID:19294See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075447.13 ENSMUSP00000074898.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075447.13Link to Ensembl Protein Viewer:ENSMUSP00000074898.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000075447Re-query CCDS DB by Protein ID:ENSMUSP00000074898
Original member Current member NCBI NM_008990.3 NP_033016.3 Accepted alive Link to Nucleotide Sequence:NM_008990.3Link to Protein Sequence:NP_033016.3Re-query CCDS DB by Nucleotide ID:NM_008990Re-query CCDS DB by Protein ID:NP_033016Link to BLAST:NP_033016.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033016.3 530 P32507-1 530 100% 0 0

Chromosomal Locations for CCDS 20913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19717515 19717787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19719196 19719282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19719433 19719496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19721353 19721506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19730038 19730186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19730612 19730729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19732915 19733211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19738012 19738374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19749215 19749302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGCCCGGGCCGCAGTCCTCCCGCCGTCCAGATTGTCACCGACGCTGCCGTTGTTGCCGCTGCTACTGC
TCCTGCTTCAGGAAACAGGAGCCCAAGATGTGCGGGTACGAGTGCTTCCCGAGGTCCGGGGCCGCTTGGG
AGGCACCGTGGAGTTACCGTGCCACCTGCTCCCACCCACGACGGAGCGCGTCTCTCAGGTGACCTGGCAG
CGCCTGGATGGCACAGTTGTGGCTGCTTTCCACCCATCCTTCGGAGTGGATTTCCCCAACTCTCAGTTCA
GCAAGGACCGTCTGTCCTTTGTCAGAGCGAGACCAGAAACAAACGCAGACCTGCGGGATGCCACACTGGC
CTTCCGGGGACTGAGGGTAGAGGACGAGGGCAATTACACCTGCGAGTTTGCCACGTTTCCCAACGGTACC
CGCAGGGGGGTGACCTGGCTCAGAGTCATAGCCCAGCCTGAGAACCACGCTGAAGCCCAGGAGGTCACAA
TTGGCCCCCAGTCGGTGGCTGTAGCCCGCTGTGTCTCCACTGGGGGCCGCCCCCCTGCCCGAATCACCTG
GATCTCATCTCTGGGTGGAGAGGCCAAAGATACTCAGGAGCCAGGGATACAGGCTGGCACCGTCACTATC
ATCAGCCGATACTCCTTGGTGCCCGTGGGCCGAGCGGATGGCGTCAAGGTCACGTGTAGAGTGGAACACG
AGAGCTTCGAAGAGCCGATCCTGCTGCCAGTGACCCTCTCTGTGCGCTACCCTCCAGAAGTATCCATCTC
CGGCTATGATGACAACTGGTACCTTGGCCGCAGTGAGGCCATACTGACCTGTGATGTACGAAGCAACCCA
GAGCCCACAGACTATGACTGGAGCACGACCTCGGGCGTCTTCCCAGCCTCTGCAGTGGCCCAGGGCTCTC
AGCTGCTTGTCCACTCTGTGGATCGAATGGTCAACACTACCTTCATCTGTACAGCCACCAACGCTGTGGG
GACAGGCCGTGCTGAGCAGGTCATCCTGGTGCGAGAGTCACCCAGCACAGCAGGAGCAGGGGCCACTGGT
GGCATCATTGGAGGTATTATCGCTGCCATCATCGCCACCGCAGTGGCTGGCACAGGCATCCTCATCTGCC
GACAACAGCGGAAGGAGCAGAGGCTTCAAGCTGCGGATGAGGAAGAAGAACTGGAAGGACCTCCCTCCTA
TAAACCACCCACCCCGAAGGCCAAGCTGGAGGAACCAGAGATGCCCTCTCAACTCTTCACCTTGGGGGCC
TCAGAGCACAGCCCAGTGAAGACGCCATACTTTGATGCTGGTGTCTCTTGTGCTGATCAGGAGATGCCTC
GGTATCACGAGCTGCCCACTCTGGAAGAGCGGTCAGGGCCCCTGCTGTTGGGGGCTACAGGCCTGGGACC
TTCTCTTCTGGTGCCTCCAGGACCCAATGTTGTGGAGGGGGTTTCCCTGAGTCTCGAAGATGAGGAGGAA
GATGATGAGGAGGAAGACTTCCTGGATAAAATCAACCCTATTTATGATGCCCTGTCCTACCCCAGCCCCT
CTGACTCCTACCAGAGCAAAGACTTTTTTGTGTCACGGGCCATGTATGTGTGA

Translation (530 aa):
MARAAVLPPSRLSPTLPLLPLLLLLLQETGAQDVRVRVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQ
RLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATFPNGT
RRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTI
ISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYPPEVSISGYDDNWYLGRSEAILTCDVRSNP
EPTDYDWSTTSGVFPASAVAQGSQLLVHSVDRMVNTTFICTATNAVGTGRAEQVILVRESPSTAGAGATG
GIIGGIIAAIIATAVAGTGILICRQQRKEQRLQAADEEEELEGPPSYKPPTPKAKLEEPEMPSQLFTLGA
SEHSPVKTPYFDAGVSCADQEMPRYHELPTLEERSGPLLLGATGLGPSLLVPPGPNVVEGVSLSLEDEEE
DDEEEDFLDKINPIYDALSYPSPSDSYQSKDFFVSRAMYV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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