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Report for CCDS17210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17210.1 Public Mus musculus 2 Zgpat 23 108 98 CCDS HistoryNCBI Gene:229007Re-query CCDS DB by CCDS ID:17210.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029105.11 ENSMUSP00000029105.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029105.11Link to Ensembl Protein Viewer:ENSMUSP00000029105.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029105Re-query CCDS DB by Protein ID:ENSMUSP00000029105
Original member Current member EBI ENSMUST00000108807.8 ENSMUSP00000104435.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108807.8Link to Ensembl Protein Viewer:ENSMUSP00000104435.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108807Re-query CCDS DB by Protein ID:ENSMUSP00000104435
Original member Current member EBI ENSMUST00000116366.8 ENSMUSP00000112067.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116366.8Link to Ensembl Protein Viewer:ENSMUSP00000112067.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116366Re-query CCDS DB by Protein ID:ENSMUSP00000112067
Original member Current member NCBI NM_001048148.1 NP_001041613.1 Accepted alive Link to Nucleotide Sequence:NM_001048148.1Link to Protein Sequence:NP_001041613.1Re-query CCDS DB by Nucleotide ID:NM_001048148Re-query CCDS DB by Protein ID:NP_001041613Link to BLAST:NP_001041613.1
Original member Current member NCBI NM_144894.3 NP_659143.1 Accepted alive Link to Nucleotide Sequence:NM_144894.3Link to Protein Sequence:NP_659143.1Re-query CCDS DB by Nucleotide ID:NM_144894Re-query CCDS DB by Protein ID:NP_659143Link to BLAST:NP_659143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041613.1 511 Q8VDM1 511 100% 0 0
NP_659143.1 511 Q8VDM1 511 100% 0 0

Chromosomal Locations for CCDS 17210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181365672 181366252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181378383 181378516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181378751 181378906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181379570 181379689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181379774 181380179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181380375 181380513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGACGAGGACAACCTAGAGACTGCCCTGCAGACCTACCGGGCCCAGCTGCAGCAGGTAGAGCTGGCGC
TCGGTGCTGGCCTAGACGCTTCTGAGCAGGCGGACCTGCGTCAGCTGCAGGGCGATCTAAAGGAGCTGAT
TGAGCTCACCGAGGCCAGCCTGTTGTCGGTCAGAAAGAGCAAGCTGCTGTCTACAGTGGACCAGGAGAGC
CCAGCTCAAGAGGATGCTGAGTACCTGGCTTTCCAGAAGGCCATTGCGGAGGAAGTGGAAGCGCCCGGCG
CCCCCTGCAATGACTCGGAGACGGCCCCTGGGAGCGAGGTGCAGCCGGGATCCACCTCCTCTGCACTGGA
GGAGGAGGAGGAGGACCCAGATCTGGAGGAACTGAGCGGTGCTAAAGTGAATGCCCCCTACTACAGCGCT
TGGGGCACGCTGGAGTATCACAACGCTATGGTAGTGGGCGCCGAAGAGGCGGAGGATGGTTCTGCGTGCG
TCCGAGTCCTCTACCTATACCCTACCCACAAGTCCCTGAAGCCCTGTCCGTTCTTCCTGGAGGGAAAGTG
CCGGTTCAAGGAGAACTGCAGGTTCTCCCATGGGCAGGTGGTATCTGTGGATGAGCTGCGTCCCTTTCAG
GATCCAGACTTAAGCTTACTGCAGACTGGCTCTGCATGTCTGGCCAAGCACCAGGATGGCCTGTGGCACC
CAGCACGGATCACTGATGTGGACAATGGCTACTATACCGTTAAGTTTGACTCATTGCTGCTGAAGGAGGC
TGTAGTGGAGGGGGACAGCATCCTGCCTCCTCTGCGCACTGAGGCTACAGAGTCATCTGACTCAGACACT
GGTGATGCAAGTGACTCCAGCTATGCCAGAGTGGTGGAACCAAGCACGGTGGACACTGGGACCTGCAGTT
CTGCCTTTGCTGGCTGGGAGGTACACACACGGGGCATTGGCTCCAAACTCCTCGTCAAGATGGGCTATGA
GTTTGGCAAGGGTTTGGGCCGGCATGCAGAAGGCCGGGTGGAGCCCATCCATGCTGTAGTGTTGCCTAGA
GGGAAATCACTGGACCAGTGTGCAGAGATACTGCAGAAGAAGACAAAGCGAGGCCAGGCTGGGTCCAACA
GGCCTCCAAAATGCCGGAGGAGTGGTAGTAGACCTGAGGGCCGCCCACCCCCCCGGAATGTGTTTGACTT
TTTGAATGAAAAACTGCAAAGCCAGGTTCCTGGGACCCCAGATGCTGGGGTGGATACCCCAGAGAGAAGG
AACAAAGACATGTATCACGCCAGCAAGAGCGCCAAGCAGGCTTTGAGCCTGCAGCTCTTCCAGACTGAGG
AGAAGATTGAGCGGACCCAACGGGACATCCGGGGCATCCAGGAGGCCCTAACCCGGAACACTGGCCGGCA
CAATATGACGACAGCCCATCTGCAGGAGAAGCTGGAGGGAGCCCAGCGGCAGCTGGGTCAGCTGCGTGCT
CAGGAGGCTGACCTACAGAGGAAACAGCGGAAGGCAGACACTCACAGGAAGATGACAGAGTTCTAG

Translation (511 aa):
MDEDNLETALQTYRAQLQQVELALGAGLDASEQADLRQLQGDLKELIELTEASLLSVRKSKLLSTVDQES
PAQEDAEYLAFQKAIAEEVEAPGAPCNDSETAPGSEVQPGSTSSALEEEEEDPDLEELSGAKVNAPYYSA
WGTLEYHNAMVVGAEEAEDGSACVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSVDELRPFQ
DPDLSLLQTGSACLAKHQDGLWHPARITDVDNGYYTVKFDSLLLKEAVVEGDSILPPLRTEATESSDSDT
GDASDSSYARVVEPSTVDTGTCSSAFAGWEVHTRGIGSKLLVKMGYEFGKGLGRHAEGRVEPIHAVVLPR
GKSLDQCAEILQKKTKRGQAGSNRPPKCRRSGSRPEGRPPPRNVFDFLNEKLQSQVPGTPDAGVDTPERR
NKDMYHASKSAKQALSLQLFQTEEKIERTQRDIRGIQEALTRNTGRHNMTTAHLQEKLEGAQRQLGQLRA
QEADLQRKQRKADTHRKMTEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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