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Report for CCDS10068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10068.1 Public Homo sapiens 15 RHOV 24 110 108 CCDS HistoryNCBI Gene:171177Re-query CCDS DB by CCDS ID:10068.1Re-query CCDS DB by GeneID:171177See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10068.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220507.5 ENSP00000220507.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220507.5Link to Ensembl Protein Viewer:ENSP00000220507.4Re-query CCDS DB by Nucleotide ID:ENST00000220507Re-query CCDS DB by Protein ID:ENSP00000220507
Original member Current member NCBI NM_133639.4 NP_598378.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133639.4Link to Protein Sequence:NP_598378.3Re-query CCDS DB by Nucleotide ID:NM_133639Re-query CCDS DB by Protein ID:NP_598378Link to BLAST:NP_598378.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598378.3 236 Q96L33 236 100% 0 0

Chromosomal Locations for CCDS 10068.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40873058 40873501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40873684 40873742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40873932 40874139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGCCGCCGCGGGAGCTGAGCGAGGCCGAGCCGCCCCCGCTCCGGGCCCCGACCCCTCCCCCGCGGCGGC
GTAGCGCGCCCCCAGAGCTGGGCATCAAGTGCGTGCTGGTGGGCGACGGCGCCGTGGGCAAGAGCAGCCT
CATCGTCAGCTACACCTGCAATGGGTACCCCGCGCGCTACCGGCCCACTGCGCTGGACACCTTCTCTGTG
CAAGTCCTGGTGGATGGAGCTCCGGTGCGCATTGAGCTCTGGGACACAGCGGGACAGGAGGATTTTGACC
GACTTCGTTCCCTTTGCTACCCGGATACCGATGTCTTCCTGGCGTGCTTCAGCGTGGTGCAGCCCAGCTC
CTTTCAAAACATCACAGAGAAATGGCTGCCCGAGATCCGCACGCACAACCCCCAGGCGCCTGTGCTGCTG
GTGGGCACCCAGGCCGACCTGAGGGACGATGTCAACGTACTAATTCAGCTGGACCAGGGGGGCCGGGAGG
GCCCCGTGCCCCAACCCCAGGCTCAGGGTCTGGCCGAGAAGATCCGAGCCTGCTGCTACCTTGAGTGCTC
AGCCTTGACGCAGAAGAACTTGAAGGAAGTATTTGACTCGGCTATTCTCAGTGCCATTGAGCACAAAGCC
CGGCTGGAGAAGAAACTGAATGCCAAAGGTGTGCGCACCCTCTCCCGCTGCCGCTGGAAGAAGTTCTTCT
GCTTCGTTTGA

Translation (236 aa):
MPPRELSEAEPPPLRAPTPPPRRRSAPPELGIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSV
QVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLL
VGTQADLRDDVNVLIQLDQGGREGPVPQPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKA
RLEKKLNAKGVRTLSRCRWKKFFCFV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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