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Report for CCDS54935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54935.1 Public Homo sapiens 5 HMGXB3 24 110 108 CCDS HistoryNCBI Gene:22993Re-query CCDS DB by CCDS ID:54935.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502717.6 ENSP00000421917.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000502717.6Link to Ensembl Protein Viewer:ENSP00000421917.1Re-query CCDS DB by Nucleotide ID:ENST00000502717Re-query CCDS DB by Protein ID:ENSP00000421917
Original member Current member NCBI NM_014983.3 NP_055798.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014983.3Link to Protein Sequence:NP_055798.3Re-query CCDS DB by Nucleotide ID:NM_014983Re-query CCDS DB by Protein ID:NP_055798Link to BLAST:NP_055798.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055798.3 1292 Q12766 1292 100% 0 0

Chromosomal Locations for CCDS 54935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150004853 150004989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150006473 150006647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150010111 150010608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150012255 150012353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150018566 150018697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150024262 150024680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150026706 150026881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150027020 150027117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150030741 150030839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150032454 150032603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150036636 150036937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150037400 150037527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150040748 150040879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150041785 150041969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150045466 150045685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150047624 150047757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150048569 150048685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150050252 150050461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150051725 150052192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3879 nt):
ATGGACGCATCATATGATGGTACTGAGGTAACTGTCGTGATGGAGGAAATTGAGGAAGCCTATTGTTACA
CCTCTCCTGGGCCACCCAAGAAGAAGAAAAAGTATAAAATACATGGAGAAAAGACAAAGAAACCCAGGTC
TGCTTACCTTCTGTACTATTACGACATCTACCTGAAAGTGCAGCAGGAGCTCCCCCACCTCCCTCAGTCT
GAGATCAATAAGAAGATTAGTGAGAGTTGGAGGCTTCTCAGCGTGGCCGAGAGGAGTTACTACTTGGAGA
AAGCCAAACTAGAGAAGGAAGGTTTGGATCCTAACTCTAAGCTCTCTGCACTGACTGCTGTGGTTCCGGA
CATCCCAGGTTTCCGCAAGATCCTCCCACGCTCAGATTATATCATCATCCCCAAGAGCAGCCTGCAGGAG
GACCGGAGCTGCCCTCAGCTAGAGCTATGTGTGGCTCAGAACCAGATGTCCCCGAAAGGACCTCCTCTTG
TGTCCAACACTGCCCCGGAGACAGTGCCCAGCCATGCAGGCATGGCAGAGCAGTGCCTGGCTGTGGAGGC
CCTGGCTGAGGAGGTGGGAGCCCTTACCCAGTCAGGTGCTGTACAGGAGATTGCCACCTCAGAGATCCTC
AGCCAGGATGTGCTCCTAGAGGACGCTTCCCTAGAAGTAGGGGAGAGCCACCAACCTTACCAGACAAGCC
TGGTAATTGAAGAGACCTTGGTGAATGGCTCACCAGACCTCCCCACTGGAAGCCTGGCTGTGCCCCACCC
CCAGGTTGGGGAGAGTGTATCAGTGGTAACAGTCATGAGGGATTCCAGTGAGAGTAGCTCCTCTGCACCA
GCCACACAGTTCATCATGTTGCCTCTGCCTGCCTACTCGGTTGTGGAGAACCCCACCTCCATCAAACTGA
CCACTACATATACCCGCCGGGGCCATGGGACATGCACCAGCCCAGGGTGCTCCTTTACATATGTCACCAG
GCACAAGCCACCTAAGTGCCCTACCTGTGGTAACTTCCTAGGAGGGAAGTGGATCCCAAAGGAAAAGCCA
GCCAAAGTAAAAGTGGAATTGGCTTCTGGCGTCTCTTCCAAAGGCTCTGTGGTGAAAAGAAATCAGCAAC
CTGTCACCACTGAGCAAAATTCCTCTAAGGAAAATGCCTCCAAACTGACTCTGGAGAATTCGGAAGCTGT
AAGCCAGCTCCTGAACGTAGCTCCTCCCAGAGAAGTAGGTGAGGAGAGTGAGTGGGAGGAAGTGATCATC
TCCGATGCCCATGTTTTGGTTAAGGAAGCTCCCGGGAATTGTGGTACAGCAGTCACTAAGACGCCAGTCG
TCAAAAGTGGTGTGCAGCCTGAGGTCACTCTGGGGACAACTGACAATGACAGTCCTGGAGCAGACGTACC
AACACCATCCGAGGGGACAAGTACCTCCAGTCCACTCCCTGCTCCTAAAAAACCTACAGGAGCTGACCTG
CTTACCCCTGGGTCCAGAGCTCCAGAGCTTAAAGGCAGAGCACGGGGCAAGCCCTCATTACTGGCTGCAG
CAAGACCCATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTGCCCAG
GGCCAGGCAGGCCTTTTCCCTGAGTGATAAGACTCCCTCTGTGAGGACTTGTGGTCTGAAGCCAAGCACA
CTGAAGCAGCTGGGCCAGCCCATTCAACAGCCATCTGGCCCTGGTGAGGTGAAGCTACCAAGTGGCCCAT
CCAACAGGACTTCTCAGGTGAAAGTTGTGGAGGTCAAGCCCGATATGTTTCCTCCATATAAGTACAGCTG
CACTGTCACATTGGATTTGGGCCTGGCTACATCAAGAGGCCGGGGAAAGTGCAAGAATCCCTCTTGTAGC
TATGTCTACACCAACAGGCACAAACCTCGAATTTGTCCCAGCTGTGGTGTTAACCTTGCCAAAGACCGGA
CTGAGAAAACCACCAAGGCTATCGAGGTGAGCTCACCACTCCCAGATGTACTGAATGCCACAGAGCCCCT
GAGCACAGCCCAGAGGGAGATCCAGCGCCAGTCCACACTGCAGCTGCTGCGCAAAGTCCTGCAGATTCCT
GAGAATGAGTCAGAGCTGGCTGAGGTCTTCGCCTTGATTCATGAACTCAACAGCTCTCGACTTATCTTGT
CCAACGTGAGTGAGGAGACAGTCACCATCGAGCAAACCTCTTGGTCGAATTATTATGAGTCTCCGTCCAC
GCAGTGCCTTCTCTGTAGCAGCCCATTATTCAAAGGGGGACAAAACTCCCTGGCTGGGCCCCAGGAGTGC
TGGCTGCTGACAGCCAGCCGTCTGCAGACAGTGACTGCCCAGGTGAAGATGTGTCTGAACCCCCATTGTC
TGGCCCTGCACAGCTTCATAGACATCTACACAGGTCTCTTTAATGTGGGGAACAAGCTGCTGGTAAGCCT
GGACTTGCTTTTTGCAATCAGAAATCAGATCAAGCTCGGAGAGGACCCCAGAGTGTCCATCAATGTTGTT
CTGAAGTCGGTGCAGGAGCAGACAGAGAAGACTCTGACCTCGGAGGAGCTGAGCCAGCTGCAGGAGCTGC
TGTGCAATGGCTATTGGGCCTTTGAGTGCCTCACTGTCCGAGACTACAATGACATGATCTGTGGCATCTG
TGGTGTGGCCCCCAAAGTGGAAATGGCTCAGAGGAGTGAAGAGAATGTGCTAGCACTGAAGAGCGTGGAG
TTCACCTGGCCTGAATTCCTGGGCTCTAATGAGGTAAATGTGGAGGACTTTTGGGCCACGATGGAGACAG
AGGTGATTGAGCAGGTGGCATTTCCTGCCAGCATCCCTATCACCAAATTTGATGCGTCTGTTATTGCCCC
CTTCTTCCCACCACTCATGAGAGGAGCTGTGGTCGTCAACACTGAGAAAGACAAAAACCTGGATGTGCAG
CCAGTACCTGGCAGTGGCAGTGCCTTGGTGAGGCTGCTCCAGGAGGGCACCTGCAAGCTTGATGAGATTG
GCTCCTACAGTGAAGAGAAGCTGCAGCACCTGCTAAGGCAGTGTGGAATCCCCTTTGGGGCAGAAGACTC
CAAGGACCAGCTCTGCTTCTCCTTGTTGGCCCTCTACGAATCTGTACAGAATGGAGCTAGAGCTATACGG
CCCCCACGTCACTTCACAGGTGGTAAAATCTACAAGGTGTGCCCCCATCAGGTGGTCTGCGGCTCCAAGT
ATCTTGTGCGAGGTGAGAGTGCCCGTGACCATGTGGACCTGCTTGCCTCTTCCCGCCACTGGCCGCCTGT
CTATGTGGTAGATATGGCCACGTCAGTGGCCCTGTGTGCTGACCTCTGCTACCCAGAGCTGACTAACCAG
ATGTGGGGGAGGAACCAGGGCTGTTTCTCTAGCCCCACAGAGCCACCTGTGAGTGTGTCCTGCCCAGAGC
TCTTGGACCAGCATTATACTGTGGACATGACAGAAACTGAGCACTCTATCCAGCACCCAGTCACCAAGAC
TGCCACGCGGCGCATCGTCCATGCAGGCCTACAGCCCAATCCTGGTGACCCCAGTGCTGGGCACCACTCC
TTGGCCCTGTGCCCTGAATTGGCACCTTACGCAACCATCCTGGCCTCCATCGTGGACAGCAAACCAAACG
GTGTCCGCCAGCGGCCCATTGCCTTCGACAATGCCACTCACTATTACCTCTACAACCGCCTCATGGACTT
CCTCACCAGCCGCGAAATTGTCAATCGTCAGATCCATGACATTGTACAGAGCTGCCAGCCTGGTGAGGTG
GTCATTCGTGACACCCTCTACCGCCTTGGGGTTGCTCAGATCAAGACAGAGACAGAGGAGGAGGGTGAGG
AAGAGGAGGTGGCCGCAGTGGCAGAATAA

Translation (1292 aa):
MDASYDGTEVTVVMEEIEEAYCYTSPGPPKKKKKYKIHGEKTKKPRSAYLLYYYDIYLKVQQELPHLPQS
EINKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSDYIIIPKSSLQE
DRSCPQLELCVAQNQMSPKGPPLVSNTAPETVPSHAGMAEQCLAVEALAEEVGALTQSGAVQEIATSEIL
SQDVLLEDASLEVGESHQPYQTSLVIEETLVNGSPDLPTGSLAVPHPQVGESVSVVTVMRDSSESSSSAP
ATQFIMLPLPAYSVVENPTSIKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKP
AKVKVELASGVSSKGSVVKRNQQPVTTEQNSSKENASKLTLENSEAVSQLLNVAPPREVGEESEWEEVII
SDAHVLVKEAPGNCGTAVTKTPVVKSGVQPEVTLGTTDNDSPGADVPTPSEGTSTSSPLPAPKKPTGADL
LTPGSRAPELKGRARGKPSLLAAARPMRAILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPST
LKQLGQPIQQPSGPGEVKLPSGPSNRTSQVKVVEVKPDMFPPYKYSCTVTLDLGLATSRGRGKCKNPSCS
YVYTNRHKPRICPSCGVNLAKDRTEKTTKAIEVSSPLPDVLNATEPLSTAQREIQRQSTLQLLRKVLQIP
ENESELAEVFALIHELNSSRLILSNVSEETVTIEQTSWSNYYESPSTQCLLCSSPLFKGGQNSLAGPQEC
WLLTASRLQTVTAQVKMCLNPHCLALHSFIDIYTGLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSINVV
LKSVQEQTEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEENVLALKSVE
FTWPEFLGSNEVNVEDFWATMETEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNLDVQ
PVPGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESVQNGARAIR
PPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMATSVALCADLCYPELTNQ
MWGRNQGCFSSPTEPPVSVSCPELLDQHYTVDMTETEHSIQHPVTKTATRRIVHAGLQPNPGDPSAGHHS
LALCPELAPYATILASIVDSKPNGVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEV
VIRDTLYRLGVAQIKTETEEEGEEEEVAAVAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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