NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33577.1 Public Homo sapiens 21 RRP1B 24 110 108 CCDS HistoryNCBI Gene:23076Re-query CCDS DB by CCDS ID:33577.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340648.6 ENSP00000339145.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340648.6Link to Ensembl Protein Viewer:ENSP00000339145.4Re-query CCDS DB by Nucleotide ID:ENST00000340648Re-query CCDS DB by Protein ID:ENSP00000339145
Original member Current member NCBI NM_015056.3 NP_055871.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015056.3Link to Protein Sequence:NP_055871.1Re-query CCDS DB by Nucleotide ID:NM_015056Re-query CCDS DB by Protein ID:NP_055871Link to BLAST:NP_055871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055871.1 758 Q14684-1 758 100% 0 0

Chromosomal Locations for CCDS 33577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 43659665 43659794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43669884 43669966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43672308 43672365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43673870 43673955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43674636 43674697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43675034 43675163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43676272 43676336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43676733 43676914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43683279 43683373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43684553 43684650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43685770 43685789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43686804 43686935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43687516 43688240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43690288 43690440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43691439 43691502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43693190 43693383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2277 nt):
ATGGCCCCCGCCATGCAGCCGGCCGAGATCCAATTTGCCCAGCGGCTGGCGTCCAGCGAGAAGGGCATCC
GGGACCGAGCGGTGAAGAAGCTGCGCCAGTACATCAGCGTGAAGACGCAGAGGGAGACAGGAGGTTTCAG
TCAGGAAGAACTTCTGAAAATCTGGAAGGGGCTCTTCTACTGCATGTGGGTGCAGGATGAACCCCTTCTA
CAGGAAGAGCTCGCCAACACCATTGCACAGCTAGTCCATGCTGTTAACAACTCAGCGGCTCAACACCTGT
TCATTCAGACCTTTTGGCAAACCATGAATCGAGAATGGAAAGGAATAGACAGGCTACGCCTGGACAAATA
CTATATGCTGATTCGTCTGGTCCTGAGGCAGTCCTTTGAAGTCTTGAAGCGAAATGGCTGGGAAGAAAGC
CGAATCAAGGTTTTCTTGGATGTCCTGATGAAGGAGGTCCTGTGTCCTGAGAGTCAGTCTCCTAATGGAG
TGAGATTCCACTTCATTGATATTTACCTGGATGAACTCTCCAAAGTCGGGGGGAAGGAGCTTTTAGCAGA
TCAGAATCTCAAGTTTATCGATCCATTCTGCAAAATTGCTGCGAAGACGAAGGACCACACCCTGGTACAG
ACCATAGCTCGGGGTGTCTTCGAAGCTATCGTAGATCAGTCTCCTTTTGTGCCTGAAGAGACGATGGAGG
AACAGAAGACAAAAGTGGGTGATGGTGACCTCTCTGCTGAGGAGATACCTGAAAATGAGGTATCCTTGAG
AAGAGCTGTCAGTAAAAAGAAGACAGCACTGGGCAAAAACCATTCCAGAAAAGATGGACTCAGTGATGAA
AGAGGAAGAGATGACTGTGGAACCTTTGAGGACACAGGGCCCCTTCTCCAGTTTGACTATAAGGCTGTTG
CTGATCGACTCCTGGAAATGACCAGCAGGAAGAACACGCCCCACTTCAACAGGAAGCGCCTCTCCAAACT
CATCAAGAAATTCCAAGACCTTTCTGAAGGAAGCAGTATATCTCAACTCAGTTTTGCGGAGGACATTTCT
GCTGATGAAGATGACCAAATCCTCAGTCAAGGAAAGCATAAGAAGAAAGGAAATAAACTTTTAGAGAAAA
CTAACTTGGAAAAGGAGAAAGGAAGCAGAGTCTTTTGTGTAGAGGAAGAGGACAGTGAAAGCAGTCTTCA
AAAGAGAAGAAGGAAGAAGAAGAAGAAGCACCACCTGCAGCCTGAAAATCCAGGCCCAGGGGGTGCAGCC
CCATCCCTGGAACAGAACCGGGGCAGGGAGCCCGAGGCCTCTGGGCTGAAAGCCCTGAAGGCACGTGTGG
CCGAGCCAGGTGCAGAGGCCACGTCCAGCACTGGGGAGGAGAGTGGCTCCGAGCATCCTCCAGCCGTCCC
CATGCACAATAAAAGGAAACGGCCACGGAAGAAGAGCCCGAGGGCCCACAGGGAAATGTTGGAATCAGCA
GTGTTGCCCCCAGAGGACATGTCTCAGAGTGGCCCGAGTGGCAGTCATCCTCAGGGACCTAGAGGGTCCC
CGACAGGTGGAGCCCAACTCCTAAAAAGGAAGCGGAAACTTGGAGTTGTGCCCGTCAATGGCAGTGGCCT
GTCCACGCCGGCCTGGCCTCCATTGCAGCAGGAAGGCCCTCCCACAGGCCCCGCAGAGGGGGCGAACAGC
CACACCACGCTGCCCCAGCGCAGGAGGCTGCAGAAAAAGAAGGCAGGGCCCGGCAGCCTGGAGCTCTGTG
GCCTGCCCAGCCAGAAAACAGCAAGTTTGAAAAAGAGGAAGAAAATGAGAGTGATGTCAAACTTGGTGGA
GCACAACGGGGTGCTGGAGTCCGAAGCTGGGCAACCCCAGGCTCTGGGAAGCAGTGGGACTTGCAGTTCC
CTGAAGAAGCAGAAGCTGAGGGCAGAGAGCGACTTTGTGAAGTTTGACACCCCCTTCTTACCAAAGCCCC
TGTTCTTCAGAAGAGCCAAGAGCAGCACTGCCACCCACCCTCCAGGCCCTGCCGTCCAGCTAAACAAGAC
ACCATCCAGCTCCAAGAAAGTCACCTTTGGGCTGAACAGAAACATGACTGCCGAATTCAAGAAGACAGAC
AAGAGTATCTTGGTCAGTCCCACGGGCCCTTCTCGAGTGGCCTTCGACCCTGAACAGAAGCCCCTCCACG
GGGTGCTGAAGACCCCCACCAGCTCACCTGCCAGCTCACCCCTGGTGGCCAAGAAGCCCCTGACCACCAC
ACCAAGGAGAAGGCCCAGGGCTATGGATTTCTTCTGA

Translation (758 aa):
MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLL
QEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEES
RIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVGGKELLADQNLKFIDPFCKIAAKTKDHTLVQ
TIARGVFEAIVDQSPFVPEETMEEQKTKVGDGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDE
RGRDDCGTFEDTGPLLQFDYKAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDIS
ADEDDQILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAA
PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREMLESA
VLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANS
HTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSS
LKKQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTD
KSILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH