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Report for CCDS33007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33007.1 Public Homo sapiens 19 SIPA1L3 24 110 108 CCDS HistoryNCBI Gene:23094Re-query CCDS DB by CCDS ID:33007.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33007.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222345.11 ENSP00000222345.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222345.11Link to Ensembl Protein Viewer:ENSP00000222345.4Re-query CCDS DB by Nucleotide ID:ENST00000222345Re-query CCDS DB by Protein ID:ENSP00000222345
Original member Current member NCBI NM_015073.3 NP_055888.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015073.3Link to Protein Sequence:NP_055888.1Re-query CCDS DB by Nucleotide ID:NM_015073Re-query CCDS DB by Protein ID:NP_055888Link to BLAST:NP_055888.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055888.1 1781 O60292 1781 100% 0 0

Chromosomal Locations for CCDS 33007.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38081566 38083099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38088721 38088851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38099962 38100150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38101052 38101226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38106537 38106640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38110227 38110384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38119306 38119882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38130498 38130772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38141184 38141435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38142573 38142710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38152840 38152967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38162253 38162371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38164479 38164906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38182519 38182740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38192145 38192310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38193537 38193780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38198389 38198532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38201862 38201997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38204127 38204208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38206097 38206240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5346 nt):
ATGACCACCTATCGGGCCATCCCCAGCGATGGTGTGGACCTGGCAGCCAGCTGTGGCGCCAGGGTGGGCG
ATGTCCTCCCTGGGCCACACACAGGGGACTACGCTCCCTTGGGATTCTGGGCCCAGAATGGCAGCATGTC
CCAGCCTCTTGGCGAGAGCCCGGCCACCGCCACCGCCACCGCCACCGCCACCACCCGCCCCAGCCCCACC
ACTCCCGCAATGCCCAAGATGGGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGA
GAGAGCACAGCAACCCAAGCCCCTCCCAGGACACAGATGGCACAAAGGCCACCAAGATGGCCCATTCCAT
GAGGAGCATACAGAACGGACAGCCCCCCACCAGCACCCCGGCTTCCTCAGGGTCCAAAGCCTTCCACCGA
CTCTCCAGGAGAAGGTCCAAAGACGTGGAGTTCCAGGACGGGTGGCCCCGGTCCCCCGGCAGGGCCTTCC
TCCCCCTTCGGCACCGCAGCAGCAGCGAGATCACCCTCAGCGAGTGTGACGCGGAGGACGCGGGGGAGCC
GCGGGGGGCCCGGCACACGGGGGCGCTGCCCCTCTTCCGCGAGTACGGGAGCACCTCGTCCATCGACGTG
CAGGGCATGCCCGAGCAGAGCTTCTTCGACATCCTGAACGAGTTCCGCAGCGAGCAGCCCGACGCCCGAG
GGTGCCAGGCCCTCACCGAGCTCCTCCGGGCAGATCCTGGCCCACACCTCATGGGGGGCGGCGGCGGAGC
CAAGGGGGACTCCCACAACGGGCAGCCCGCCAAGGACAGCCTCCTGCCACTGCAGCCCACGAAGGAGAAG
GAGAAGGCCCGGAAGAAACCTGCGCGGGGCCTCGGCGGCGGGGACACGGTGGACTCGTCCATCTTTCGGA
AGCTAAGGAGCAGCAAACCCGAGGGGGAGGCTGGGCGTTCCCCGGGGGAGGCCGACGAGGGCCGGAGCCC
CCCGGAAGCCAGCAGGCCGTGGGTGTGTCAGAAGAGCTTCGCCCACTTCGACGTGCAGAGCATGCTGTTC
GACCTCAACGAGGCGGCCGCCAACAGGGTGTCGGTGTCGCAGCGGCGGAACACCACCACGGGTGCTTCGG
CCGCTTCCGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCCACAGCCTCGGAGGCCTGGACCC
GGCCTTCACCAGCACAGAGGACCTAAACTGCAAGGAGAACTTGGAGCAGGACCTCGGCGATGACAACAGC
AACGACCTGCTGCTCAGCTGCCCGCACTTCCGCAATGAGATCGGGGGCGAGTGTGAGCGCAACGTGAGCT
TCTCCCGGGCTTCCGTGGGCTCCCCGAGCAGCGGCGAGGGCCACCTGGCAGAGCCCGCCCTGAGCGCCTA
CCGCACCAACGCCAGCATCTCGGTGTTGGAAGTTCCCAAGGAGCAGCAGCGGACGCAGAGTCGGCCCCGG
CAGTACAGCATCGAGCATGTGGACCTGGGCGCCCGCTACTACCAGGATTACTTCGTGGGCAAAGAACATG
CCAATTACTTCGGCGTGGATGAGAAGCTGGGGCCAGTGGCTGTGAGCATTAAGCGGGAGAAGCTGGAAGA
CCACAAGGAGCACGGACCTCAGTACCAGTACAGGATCATCTTCCGGACCCGCGAGCTCATCACCCTGCGG
GGCTCCATCCTGGAAGATGCTACGCCCACAGCCACCAAGCATGGGACCGGGCGGGGCCTGCCCTTGAAGG
ATGCCCTGGAGTATGTCATCCCCGAGCTCAACATCCACTGCCTGCGGCTGGCCCTCAACACCCCCAAGGT
GACGGAGCAACTGCTGAAGCTCGATGAGCAAGGGCTCTGCCGGAAGCACAAGGTGGGCATCCTCTATTGC
AAGGCCGGCCAGAGCTCCGAGGAGGAGATGTACAACAATGAGGAGGCCGGCCCCGCCTTTGAGGAGTTCC
TCTCCCTCATCGGCGAGAAGGTCTGCCTGAAGGGCTTCACCAAGTACGCTGCCCAGCTGGACGTCAAGAC
CGACTCCACGGGAACCCACTCCCTCTACACGATGTACCAGGACTACGAGATCATGTTCCATGTCTCCACC
CTGCTCCCTTACACCCCCAACAACAGGCAGCAGCTGCTACGGAAGAGGCACATAGGAAATGACATCGTGA
CGATCATCTTCCAGGAGCCTGGCGCGCTACCGTTCACCCCCAAGAACATCCGCTCCCACTTCCAGCACGT
CTTCATCATTGTCCGAGTCCACAACCCCTGCACTGATAACGTCTGTTACAGTATGGCTGTGACCCGATCC
AAAGACGCTCCTCCTTTCGGCCCCCCCATCCCCAGTGGAACCACATTCCGCAAATCCGACGTCTTCAGAG
ACTTCTTGCTGGCCAAGGTGATTAACGCTGAGAACGCCGCGCACAAGTCCGACAAGTTCCACACCATGGC
CACCAGGACCCGCCAGGAGTATCTCAAGGACCTGGCCGAAAACTGTGTCTCCAACACCCCCATCGACTCC
ACCGGCAAATTCAACCTCATCTCCCTGACCTCCAAGAAGAAGGAAAAGACAAAAGCACGGGCTGGCGCTG
AGCAGCACAGTGCAGGGGCCATCGCCTGGAGGGTGGTGGCCCAGGACTACGCCCAGGGGGTGGAAATCGA
CTGCATTTTGGGAATTTCCAATGAGTTTGTGGTGCTCCTGGACTTACGCACCAAGGAGGTGGTGTTCAAC
TGCTACTGCGGGGATGTCATTGGCTGGACTCCAGACTCCTCCACACTCAAAATCTTCTATGGACGAGGAG
ACCACATCTTCCTACAGGCGACAGAGGGTTCTGTGGAGGACATAAGGGAGATAGTGCAGAGACTGAAGGT
GATGACCAGTGGCTGGGAGACGGTGGACATGACGCTTCGGCGGAACGGGCTCGGGCAGCTGGGCTTCCAC
GTGAAGTACGACGGCACGGTGGCCGAGGTTGAGGACTATGGGTTCGCCTGGCAGGCCGGCCTCCGGCAGG
GCAGCCGACTAGTGGAGATCTGCAAGGTGGCCGTGGTCACACTGACCCACGACCAGATGATCGACCTGCT
GCGCACCTCTGTCACTGTGAAGGTGGTCATCATCCCGCCTTTTGAGGACGGCACTCCCCGGAGGGGTTGG
CCGGAGACCTACGACATGAATACCTCGGAGCCCAAGACGGAGCAGGAAAGCATCACTCCTGGGGGCCGGC
CCCCCTACCGCAGCAATGCTCCCTGGCAGTGGAGCGGGCCCGCATCCCATAACTCTCTACCAGCCTCCAA
GTGGGCCACTCCAACCACTCCCGGCCATGCCCAGTCCCTGAGCCGGCCCCTGAAGCAGACCCCCATAGTC
CCCTTCCGGGAGTCCCAGCCACTGCACAGCAAGAGGCCTGTCAGCTTCCCAGAAACCCCTTACACAGTAT
CACCAGCAGGGGCCGACAGAGTCCCTCCCTACCGACAGCCTTCTGGGAGCTTCTCCACCCCCGGTTCGGC
CACCTACGTGAGATACAAGCCATCCCCAGAAAGGTACACGGCTGCCCCACACCCCCTGCTATCTCTTGAT
CCCCACTTCAGCCACGATGGGACGTCCAGCGGCGACTCCTCTTCCGGCGGCCTGACCAGCCAGGAGAGCA
CCATGGAACGCCAGAAGCCAGAGCCTTTGTGGCATGTGCCTGCCCAGGCCAGGCTCTCAGCCATAGCCGG
AAGCAGCGGGAACAAGCACCCGTCCAGGCAGGATGCAGCAGGCAAAGATTCCCCCAACAGGCATTCCAAA
GGAGAACCTCAATACTCAAGTCATTCCAGCAGCAACACCCTCTCCAGCAACGCATCCAGCAGCCACAGCG
ACGACCGCTGGTTCGACCCCCTGGACCCCCTGGAGCCAGAGCAAGACCCCCTCTCCAAGGGTGGCTCTAG
TGACAGCGGCATCGACACCACCCTCTACACCTCCAGCCCTAGCTGCATGTCCCTGGCCAAGGCTCCACGG
CCCGCCAAGCCACACAAGCCCCCTGGAAGTATGGGCCTTTGTGGCGGGGGTCGCGAGGCCGCTGGGAGGT
CCCACCACGCAGACAGGCGGCGGGAGGTCTCCCCTGCCCCCGCAGTTGCCGGCCAAAGCAAGGGCTACCG
ACCGAAGCTGTACTCCTCCGGCTCCAGCACCCCCACGGGACTGGCGGGGGGCAGCCGAGACCCACCGAGG
CAGCCCAGTGACATGGGCTCGAGGGTTGGCTACCCCGCTCAGGTTTACAAAACTGCCAGTGCAGAGACTC
CTCGGCCCTCCCAGCTGGCCCAGCCCAGCCCCTTTCAGCTCTCCGCCTCCGTCCCCAAGTCCTTCTTCTC
CAAGCAGCCTGTACGCAATAAGCACCCAACAGGGTGGAAGAGAACGGAGGAGCCCCCACCACGGCCACTC
CCCTTCAGTGACCCAAAGAAGCAGGTGGACACGAACACCAAAAATGTCTTTGGGCAACCGAGGTTGAGGG
CATCCCTCCGAGACCTCCGGTCACCACGGAAGAACTACAAATCCACCATCGAGGATGACCTGAAGAAACT
CATCATCATGGACAACCTGGGGCCAGAGCAGGAGAGAGACACGGGACAGTCACCGCAGAAGGGCCTGCAG
CGGACGCTGTCGGACGAGAGCCTGTGCAGCGGGCGCCGGGAGCCCAGCTTCGCCAGCCCCGCTGGCCTAG
AGCCAGGGCTGCCCAGCGACGTGCTCTTCACCAGCACCTGCGCCTTCCCGTCCAGCACGCTGCCTGCACG
CCGCCAGCACCAGCACCCCCACCCGCCCGTCGGCCCCGGTGCCACCCCTGCCGCCGGCAGCGGCTTTCCC
GAGAAGAAATCCACCATCTCAGCCTCGGAGCTCTCGCTGGCTGATGGGCGGGACCGCCCCCTGCGGCGCC
TGGACCCTGGGCTGATGCCCCTGCCTGACACAGCTGCTGGCCTCGAGTGGTCCAGCCTGGTGAACGCAGC
CAAGGCATACGAAGTGCAAAGAGCCGTCTCACTCTTCTCTCTGAACGACCCGGCCCTGAGCCCGGACATC
CCGCCTGCACACAGTCCTGTCCACAGCCACCTGAGCCTGGAGAGGGGACCCCCGACCCCCAGGACCACCC
CTACCATGAGCGAGGAGCCACCCCTGGATCTGACAGGCAAGGTGTACCAGCTGGAGGTGATGCTGAAACA
GCTGCACACTGACCTGCAGAAGGAGAAGCAGGACAAGGTGGTGCTCCAGTCAGAGGTGGCCAGCCTGCGG
CAGAACAACCAGCGGCTGCAGGAGGAGTCGCAGGCCGCCAGCGAGCAGCTGCGCAAGTTTGCGGAGATCT
TCTGCAGGGAGAAGAAGGAGCTCTGA

Translation (1781 aa):
MTTYRAIPSDGVDLAASCGARVGDVLPGPHTGDYAPLGFWAQNGSMSQPLGESPATATATATATTRPSPT
TPAMPKMGVRARVADWPPKREALREHSNPSPSQDTDGTKATKMAHSMRSIQNGQPPTSTPASSGSKAFHR
LSRRRSKDVEFQDGWPRSPGRAFLPLRHRSSSEITLSECDAEDAGEPRGARHTGALPLFREYGSTSSIDV
QGMPEQSFFDILNEFRSEQPDARGCQALTELLRADPGPHLMGGGGGAKGDSHNGQPAKDSLLPLQPTKEK
EKARKKPARGLGGGDTVDSSIFRKLRSSKPEGEAGRSPGEADEGRSPPEASRPWVCQKSFAHFDVQSMLF
DLNEAAANRVSVSQRRNTTTGASAASAASAMASLTASRAHSLGGLDPAFTSTEDLNCKENLEQDLGDDNS
NDLLLSCPHFRNEIGGECERNVSFSRASVGSPSSGEGHLAEPALSAYRTNASISVLEVPKEQQRTQSRPR
QYSIEHVDLGARYYQDYFVGKEHANYFGVDEKLGPVAVSIKREKLEDHKEHGPQYQYRIIFRTRELITLR
GSILEDATPTATKHGTGRGLPLKDALEYVIPELNIHCLRLALNTPKVTEQLLKLDEQGLCRKHKVGILYC
KAGQSSEEEMYNNEEAGPAFEEFLSLIGEKVCLKGFTKYAAQLDVKTDSTGTHSLYTMYQDYEIMFHVST
LLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGALPFTPKNIRSHFQHVFIIVRVHNPCTDNVCYSMAVTRS
KDAPPFGPPIPSGTTFRKSDVFRDFLLAKVINAENAAHKSDKFHTMATRTRQEYLKDLAENCVSNTPIDS
TGKFNLISLTSKKKEKTKARAGAEQHSAGAIAWRVVAQDYAQGVEIDCILGISNEFVVLLDLRTKEVVFN
CYCGDVIGWTPDSSTLKIFYGRGDHIFLQATEGSVEDIREIVQRLKVMTSGWETVDMTLRRNGLGQLGFH
VKYDGTVAEVEDYGFAWQAGLRQGSRLVEICKVAVVTLTHDQMIDLLRTSVTVKVVIIPPFEDGTPRRGW
PETYDMNTSEPKTEQESITPGGRPPYRSNAPWQWSGPASHNSLPASKWATPTTPGHAQSLSRPLKQTPIV
PFRESQPLHSKRPVSFPETPYTVSPAGADRVPPYRQPSGSFSTPGSATYVRYKPSPERYTAAPHPLLSLD
PHFSHDGTSSGDSSSGGLTSQESTMERQKPEPLWHVPAQARLSAIAGSSGNKHPSRQDAAGKDSPNRHSK
GEPQYSSHSSSNTLSSNASSSHSDDRWFDPLDPLEPEQDPLSKGGSSDSGIDTTLYTSSPSCMSLAKAPR
PAKPHKPPGSMGLCGGGREAAGRSHHADRRREVSPAPAVAGQSKGYRPKLYSSGSSTPTGLAGGSRDPPR
QPSDMGSRVGYPAQVYKTASAETPRPSQLAQPSPFQLSASVPKSFFSKQPVRNKHPTGWKRTEEPPPRPL
PFSDPKKQVDTNTKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIIMDNLGPEQERDTGQSPQKGLQ
RTLSDESLCSGRREPSFASPAGLEPGLPSDVLFTSTCAFPSSTLPARRQHQHPHPPVGPGATPAAGSGFP
EKKSTISASELSLADGRDRPLRRLDPGLMPLPDTAAGLEWSSLVNAAKAYEVQRAVSLFSLNDPALSPDI
PPAHSPVHSHLSLERGPPTPRTTPTMSEEPPLDLTGKVYQLEVMLKQLHTDLQKEKQDKVVLQSEVASLR
QNNQRLQEESQAASEQLRKFAEIFCREKKEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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