NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32666.1 Public Homo sapiens 17 GPATCH8 24 110 108 CCDS HistoryNCBI Gene:23131Re-query CCDS DB by CCDS ID:32666.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32666.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000591680.6 ENSP00000467556.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000591680.6Link to Ensembl Protein Viewer:ENSP00000467556.1Re-query CCDS DB by Nucleotide ID:ENST00000591680Re-query CCDS DB by Protein ID:ENSP00000467556
Original member Current member NCBI NM_001002909.4 NP_001002909.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002909.4Link to Protein Sequence:NP_001002909.1Re-query CCDS DB by Nucleotide ID:NM_001002909Re-query CCDS DB by Protein ID:NP_001002909Link to BLAST:NP_001002909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002909.1 1502 Q9UKJ3-1 1502 100% 0 0

Chromosomal Locations for CCDS 32666.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44397568 44401453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44405921 44406051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44424349 44424492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44435065 44435151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44436478 44436545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44464472 44464544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44474829 44474903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44503326 44503370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4509 nt):
ATGGCGGACCGCTTCTCCCGCTTCAACGAAGACCGAGACTTTCAGGGTAATCACTTTGATCAGTATGAGG
AAGGACACTTGGAAATTGAACAAGCGTCACTTGACAAGCCTATAGAATCGGATAATATTGGACACCGCTT
ACTCCAGAAACATGGGTGGAAGCTGGGCCAGGGATTGGGAAAATCTCTTCAGGGGAGAACAGATCCCATT
CCAATCGTTGTCAAGTATGATGTCATGGGCATGGGTCGCATGGAAATGGAGCTTGATTATGCTGAAGATG
CTACCGAACGGCGCCGTGTCCTAGAAGTAGAAAAAGAAGACACAGAAGAGCTGAGACAAAAGTACAAGGA
TTATGTTGACAAAGAGAAGGCAATTGCCAAAGCCTTGGAAGACCTCAGAGCCAACTTTTATTGTGAACTG
TGTGATAAGCAATATCAGAAACATCAGGAATTTGATAACCATATCAACTCCTATGATCATGCACACAAGC
AGAGATTAAAAGATCTGAAGCAGAGAGAGTTTGCTCGAAATGTCTCTTCAAGATCCCGCAAGGATGAGAA
AAAACAGGAAAAAGCCCTTCGGCGGCTCCATGAGTTGGCAGAGCAAAGAAAACAAGCTGAATGTGCACCT
GGAAGTGGTCCCATGTTCAAACCAACCACAGTGGCTGTAGATGAAGAAGGTGGAGAAGATGATAAAGATG
AATCAGCTACAAATAGTGGCACAGGTGCCACTGCTTCTTGTGGCCTGGGATCTGAATTCTCCACAGATAA
AGGAGGCCCTTTCACTGCAGTACAAATCACTAATACCACTGGACTGGCCCAGGCTCCTGGGTTAGCCTCC
CAAGGCATCAGCTTTGGCATTAAGAATAATCTGGGGACCCCATTGCAAAAATTGGGAGTGTCATTTTCTT
TTGCCAAAAAGGCTCCTGTCAAACTCGAATCAATAGCATCAGTTTTCAAGGACCATGCGGAGGAAGGGAC
CTCTGAAGATGGAACAAAACCCGATGAGAAGAGTTCTGACCAAGGACTGCAGAAGGTAGGAGACTCTGAT
GGGAGCAGTAATCTTGATGGTAAAAAAGAGGATGAAGACCCTCAGGATGGAGGGTCCCTTGCCTCAACAT
TATCCAAATTAAAAAGGATGAAACGAGAAGAAGGAGCTGGGGCTACAGAGCCTGAGTATTACCACTACAT
CCCCCCAGCACACTGCAAAGTAAAACCTAATTTTCCCTTTCTACTTTTTATGAGAGCCAGTGAACAAATG
GATGGTGATAATACTACACACCCAAAGAATGCCCCAGAGAGTAAAAAAGGCAGTTCTCCCAAGCCTAAAA
GCTGCATCAAGGCGGCAGCAAGCCAAGGAGCAGAAAAGACAGTTAGTGAAGTCTCTGAGCAGCCGAAGGA
AACCAGCATGACCGAGCCCTCAGAACCAGGAAGCAAAGCTGAGGCAAAGAAGGCCTTAGGAGGGGATGTA
AGTGATCAGAGTTTAGAAAGTCATAGTCAGAAGGTTTCAGAGACCCAAATGTGTGAGTCCAACTCTTCTA
AAGAAACCTCTCTGGCCACCCCAGCAGGGAAAGAAAGCCAAGAAGGACCCAAACATCCTACTGGTCCCTT
CTTCCCAGTTTTGAGCAAAGATGAAAGCACTGCCCTCCAGTGGCCATCAGAACTATTAATTTTCACCAAG
GCAGAACCCTCCATTTCATACAGTTGTAACCCTTTATATTTTGACTTTAAACTTTCAAGGAACAAAGATG
CCAGAACTAAAGGAACAGAAAAACCAAAGGATATAGGAAGCTCCTCAAAGGACCATCTCCAAGGCCTAGA
TCCTGGTGAGCCAAATAAAAGCAAGGAAGTGGGCGGAGAGAAAATAGTACGTTCCTCAGGAGGCAGAATG
GACGCACCTGCTTCAGGGTCTGCCTGTAGCGGCCTGAACAAGCAGGAGCCTGGGGGTAGCCATGGGTCTG
AGACAGAAGACACAGGGAGAAGCCTTCCCAGCAAGAAAGAACGATCTGGGAAGTCCCACCGGCACAAAAA
GAAAAAGAAGCACAAAAAATCCAGCAAACACAAACGTAAACACAAGGCTGACACAGAAGAGAAAAGCTCT
AAGGCAGAGTCAGGGGAGAAATCTAAGAAGCGCAAGAAACGAAAACGAAAGAAGAATAAGTCATCAGCCC
CAGCAGATTCTGAACGAGGACCCAAACCAGAACCCCCTGGGAGTGGCAGTCCCGCACCACCAAGAAGAAG
GCGGAGAGCTCAAGATGACTCCCAGCGGAGATCCCTCCCAGCTGAAGAGGGGAGCAGTGGCAAAAAGGAT
GAAGGTGGGGGTGGTAGCAGCTCCCAAGACCATGGTGGGAGGAAACACAAAGGTGAACTTCCACCTTCAT
CCTGCCAGCGAAGAGCAGGCACCAAACGGAGCAGCCGGTCTAGCCATCGGAGCCAACCCAGTAGTGGAGA
TGAGGATAGTGATGATGCTTCCTCACACCGGCTGCACCAGAAGTCTCCATCCCAGTACAGTGAGGAAGAA
GAAGAGGAAGATTCAGGCAGTGAGCATTCCCGCAGCCGCTCAAGGTCTGGCCGGCGCCATTCCTCGCATC
GTTCCTCCCGGCGTTCTTACTCAAGTAGCTCAGATGCCTCTTCAGACCAGAGCTGCTATAGTAGACAGCG
CAGTTACTCTGATGACAGCTACAGTGACTACAGTGACAGATCACGAAGGCACTCCAAGCGCTCCCATGAC
TCAGATGACTCAGACTATGCCAGCTCCAAACACCGATCAAAACGGCACAAATATTCATCTTCTGATGATG
ACTATAGCCTCAGTTGCAGCCAGTCCCGAAGCCGATCTCGGAGTCATACCAGAGAGCGCTCAAGATCCCG
GGGCCGCAGCCGCAGCAGCAGTTGTAGTCGTAGTCGAAGCAAGCGGAGAAGCCGTAGCACCACAGCCCAC
AGCTGGCAACGGAGCCGGAGCTATAGCCGGGACCGCAGCCGCAGCACCAGGAGCCCTTCCCAGAGATCAG
GCTCCAGGAAGAGATCATGGGGTCACGAGAGCCCTGAGGAGAGGCATTCTGGGCGTCGGGACTTCATTCG
TTCTAAGATCTACCGCTCCCAGTCCCCCCACTATTTCCGATCAGGCCGGGGAGAAGGTCCTGGGAAGAAA
GATGATGGCAGAGGAGATGACAGTAAAGCAACAGGTCCACCTTCCCAGAACAGCAACATTGGCACAGGAA
GAGGGTCAGAAGGTGACTGCAGTCCTGAAGACAAGAACTCTGTCACTGCCAAACTGCTACTGGAGAAGAT
CCAGTCAAGGAAAGTGGAGAGGAAACCTAGTGTGAGTGAGGAGGTGCAGGCCACCCCTAATAAAGCTGGG
CCCAAGCTCAAGGACCCCCCACAAGGTTACTTTGGGCCCAAGCTCCCCCCATCTCTTGGCAATAAGCCTG
TCCTTCCACTGATAGGGAAGCTCCCAGCTACCCGAAAGCCCAATAAGAAGTGTGAAGAGTCTGGCTTGGA
AAGGGGGGAAGAGCAAGAACAGTCAGAGACAGAAGAGGGGCCCCCAGGGAGTAGTGATGCCCTATTTGGG
CATCAGTTCCCTTCAGAGGAAACAACTGGCCCCTTATTAGACCCACCCCCAGAAGAGTCAAAGTCTGGAG
AAGCTACTGCTGATCACCCTGTGGCTCCACTAGGCACCCCAGCACATTCTGACTGCTACCCTGGGGACCC
AACCATCTCCCATAACTACCTCCCCGACCCCAGTGATGGGGACACCCTGGAGTCCCTGGATAGCAGCAGT
CAGCCAGGCCCTGTGGAGTCCAGCTTGCTGCCTATAGCACCAGACCTTGAGCATTTCCCCAGTTATGCAC
CTCCCAGTGGGGATCCTAGTATTGAGTCAACAGATGGGGCTGAGGATGCTTCACTGGCCCCCCTGGAAAG
CCAGCCCATCACCTTCACCCCTGAGGAGATGGAGAAGTACAGCAAGCTCCAGCAGGCTGCTCAGCAACAC
ATCCAGCAGCAGCTTCTGGCCAAGCAAGTAAAGGCCTTTCCAGCCTCAGCTGCCCTGGCCCCAGCCACAC
CAGCCCTGCAACCCATCCACATTCAGCAGCCAGCTACAGCCTCTGCCACCTCCATCACAACTGTTCAGCA
TGCCATCCTACAACATCATGCTGCCGCAGCTGCTGCCGCCATCGGCATTCACCCTCACCCCCATCCCCAA
CCACTTGCCCAGGTGCATCATATTCCCCAGCCCCATCTGACCCCCATTTCTTTGTCCCACCTCACTCACT
CAATCATCCCTGGCCACCCTGCCACCTTTCTCGCTAGCCATCCCATCCACATCATTCCCGCCTCAGCCAT
CCATCCTGGGCCCTTCACCTTTCACCCTGTCCCACATGCTGCCCTCTACCCCACCCTACTTGCTCCACGG
CCTGCTGCAGCAGCTGCCACTGCACTTCACCTTCACCCACTACTTCACCCCATCTTCTCAGGTCAGGACC
TGCAACATCCCCCCAGCCATGGCACGTGA

Translation (1502 aa):
MADRFSRFNEDRDFQGNHFDQYEEGHLEIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPI
PIVVKYDVMGMGRMEMELDYAEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCEL
CDKQYQKHQEFDNHINSYDHAHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQAECAP
GSGPMFKPTTVAVDEEGGEDDKDESATNSGTGATASCGLGSEFSTDKGGPFTAVQITNTTGLAQAPGLAS
QGISFGIKNNLGTPLQKLGVSFSFAKKAPVKLESIASVFKDHAEEGTSEDGTKPDEKSSDQGLQKVGDSD
GSSNLDGKKEDEDPQDGGSLASTLSKLKRMKREEGAGATEPEYYHYIPPAHCKVKPNFPFLLFMRASEQM
DGDNTTHPKNAPESKKGSSPKPKSCIKAAASQGAEKTVSEVSEQPKETSMTEPSEPGSKAEAKKALGGDV
SDQSLESHSQKVSETQMCESNSSKETSLATPAGKESQEGPKHPTGPFFPVLSKDESTALQWPSELLIFTK
AEPSISYSCNPLYFDFKLSRNKDARTKGTEKPKDIGSSSKDHLQGLDPGEPNKSKEVGGEKIVRSSGGRM
DAPASGSACSGLNKQEPGGSHGSETEDTGRSLPSKKERSGKSHRHKKKKKHKKSSKHKRKHKADTEEKSS
KAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGSSGKKD
EGGGGSSSQDHGGRKHKGELPPSSCQRRAGTKRSSRSSHRSQPSSGDEDSDDASSHRLHQKSPSQYSEEE
EEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHD
SDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAH
SWQRSRSYSRDRSRSTRSPSQRSGSRKRSWGHESPEERHSGRRDFIRSKIYRSQSPHYFRSGRGEGPGKK
DDGRGDDSKATGPPSQNSNIGTGRGSEGDCSPEDKNSVTAKLLLEKIQSRKVERKPSVSEEVQATPNKAG
PKLKDPPQGYFGPKLPPSLGNKPVLPLIGKLPATRKPNKKCEESGLERGEEQEQSETEEGPPGSSDALFG
HQFPSEETTGPLLDPPPEESKSGEATADHPVAPLGTPAHSDCYPGDPTISHNYLPDPSDGDTLESLDSSS
QPGPVESSLLPIAPDLEHFPSYAPPSGDPSIESTDGAEDASLAPLESQPITFTPEEMEKYSKLQQAAQQH
IQQQLLAKQVKAFPASAALAPATPALQPIHIQQPATASATSITTVQHAILQHHAAAAAAAIGIHPHPHPQ
PLAQVHHIPQPHLTPISLSHLTHSIIPGHPATFLASHPIHIIPASAIHPGPFTFHPVPHAALYPTLLAPR
PAAAAATALHLHPLLHPIFSGQDLQHPPSHGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH