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Report for CCDS39353.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
39353.2 |
Public |
Mus musculus |
5 |
Micall2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:231830](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:39353.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 39353.2 |
The coding region has been updated to extend the N-terminus and to correct mismatches versus the reference genome assembly in the coding region which results in 4 aa changes to the C-terminus of the protein. This N-terminal extension is 114aa long, is supported by available conservation data and adds a CH (calponin homology) domain (SMART). |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 39353.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000044642.13 |
ENSMUSP00000039707.10 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000044642.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000039707.10](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000044642](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000039707](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_174850.3 |
NP_777275.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_174850.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_777275.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_174850](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_777275](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_777275.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_777275.2 |
1009 |
Q3TN34 |
1009 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 39353.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3030 nt): ATGGCCGCCATAAAGGCCCTGCAAGAATGGTGCCGGCAGCAGTGCGAGGGCTACCGGGACGTGAGCATCA CCAACATGACCACCTCGTTCCGCGATGGCCTGGCCTTCTGCGCTATCTTGCACCGACACCGGCCTGACCT TATAAACTTCAGTGCCCTCCGGAAGGAAAACATTTACGAGAACAACAAGTTGGCCTTCCAAGTGGCTGAG GAACAGCTGGGCATCCCAGCCCTGCTAGACGCTGAGGACATGGTGGCCTTGAAGGTTCCAGACCGGCTGA GCATTCTCACCTATGTGTCACAATACTACAACTACTTCCATGGCCGGTCCCCAATTGGGGGCATGGCTGG CATAAAGAGACCCTCATCCGATTCGACCGAAGAACTTTCTGGAAAGAAGGGCCTGTCCCAGCCTGCCAAG TTGCCCTCGCCGGCTCAAACCCAGAGGTCACCACTGTCCCCAGCTCGGACAAACCCTGTGGTTCAGAGGA ATGAAGGTGGCTCACAAAGACCATCCCCAAAGGCTGCTCCGGGGACCGCGGGAAGCTCTGTCAGCAGTAT CTGTGGGGTCTGTGGCAAACATGTTCACCTTGTGCAGCGGCACCTGGCTGACGGGCGCCTCTACCACCGA AGCTGCTTCAGGTGTAAACAGTGCTCCAGCACGCTGCACTCGGGGGCCTACCGTGCCACGGGAGAGCCCG GAGTCTTCGTCTGTACCCACCACAGCTCAGAAGTCACCTCTGTGAGCCCCAAGTCATCAAACCTGGCCTC CAGGAAACCAGGGGGTGTCACTGCAGACACCAGGCCATTCGGCGTCTCATGGACGGTTCAGGAGGCAAAT GGAGAGGGGACACCACTGAGGGTCAGGACAGCAGCATGGGAACACGCTGGAGGAAACACAACCGCCAAAG GTTTTGTCCAGACGGAACTTAAGCCACCATCTACCTCCCAAGTCCACGTGGGGAGCTCTGCGGGGCCCAA GCTACCCACGATCACAGTGACTACTACTTCTGTGACTAGCAAAGCTCTCACCCATGTGACGAATAGCTCC CCAATAGGATGGTCATCGCCTGCCCAGAGCAGCCCAGCGAACTTCAACTCCCGCCCAGTTGTATCCCCAA GTGCTCGGAACACTCACCTACCTGGGTCCCAAGGGCAGACAGCCTCAAAAGGTGTTAAGACTCAGCTCAA CTTGAACTCAGAGTCTTCAAACACAGCGGTCACCCCAGCCTGGACTTCCTCAGCCTCTAAGACCCAGCAG GCCCGAGAGAAATTTTTCCAGACCCCTCCCTCGGCCCCAGCCCCAGCCTCAGCCCCAGCCCCAGCCCCCA CCAGCAAGGTCCCCACTGTAGTGACTGTCCCCACCAGCAAGGTCCCCAATGTGGTGACTGCCCCCACCAG CAAGGTCCCCACTGTAGTGACTGTCCCCACCAGCAAGGTCCCCACTGTGGTGTCTGCCCCCACCAGCAAG GTCCCTACTGTGGTGTCTGCCCCCACCAGCAAGGTCCCCACTGTGGTGAATTCCACTAATAGCAGGGTCA CCACGGTAGTAAATGCCCCCACCAGCAAGGTCCCCACTGTAGTGAGTGCCACAAATGGCAGGGTGCCCAC TGTGGTGACTGCCCACACTGGTAGGGTCCCTGCTGTGATGAATACCTCTGCCAGCAAAGTCTCTCCTGTT GTGGATGCCCCTGCCCAGGAGAGCAGCCGGGAGCAAGCATTAAGTGTCCTTAGGAAGGCCCTTCCGGCGC TGACAGGATCTGGTACCCAGGCTCCAAACAGGTCCTTCCCAGCCACTTCCTCTGTCCTGGTAACCCTTCC CAAGAATGAAGTGCCACAAAAAGTTCCCTCAGACAAGCTCTCAGCTTTAACCACCCAGACTCCTAATTTC ACTATAAAGCTAGAGCCTTCAGCCCCAGTGAATGTGGGCAATACCGCTGTATTTCTCCAGGCTGGCAAAA AGAGCCCGAGTATTTCTCCAAGGGTTGGTAAGACCAGCGTTGGCTCCAGGCCACAAGCAGAGGTGGCAGG AGTAAAGGGTCCAGGTCCCATCTCTCAGGAAGGCCAAGAGGAGGGACCAGAAGGATGGAGGGCCCGGCTG AAGCCTGTGGATAAGAAAACCCCTGCTGGGAGGTCTCTGGAGCAAAAAGAGCCAGTCCTGGCAGAGCCAA GGATAGGTGACACTTCCAGGAAAGCCTCTAGTAGCTCTGACTCCAGCGTCCATATCACCTTGACTTCTAT TCAGCACAAGAGGAAACCATGCCCTGCTGGTTCCGGGCCCAGTCCTGCAGCCCTCTCTCCTTCTCCATCA CACCGCAAGAAACTAGCTGTCCCTCCCAGCCTTGATGTTTCAGCTGATTGGCTCCAGCCAGAGCCCAAGA AGCAGGAAGATGGGACCAGGAGCTGTAAGGAGGAGAAGTCACCCACCAGGTGGTCAAGAGAGAGGTCTGC AGTCCTGGACAGTGGCCTTGCTCCACCTGGTGAAGCTGTCACTTCCCCAGTCAGGCTCCACCCCGACTAT ATCCCCCAGGAGGAGCTGCAGAGGCAGCTGCAGGACATTGAGAGCCAACTGGACGCCCTGGAGCTCAGGG GTGTTGAGTTGGAGAAGCGGCTGCGGGCAGCTGAGGGAGATGCTTCTGAGGATAGCCTCATGGTGGACTG GTTCCGGCTTATTCATGAGAAGCAGCTACTGTTGAGGCTGGAATCGGAACTCATGTACAAGTCCAAGGAC CAGCGCCTGGAGGAGCAGCAGCTGGACCTCCAGGGTGAGCTGCGCAGGCTGATGGACAAGCCAGAGGGTC TGAAGTCCCCCCAGGACCGCCAGCGGGAGCAGGAGCTGCTGAGCCAATACGTGAACACCGTGAATGACCG AAGTGACATCGTTGACTTCCTGGATGAGGATCGGCTCCGGGAACAGGAAGAGGACCAAATGCTGGAGAAT ATGATCCAGAACCTGGGCCTCCAGAGAAAGAAGTCCAAGTCCTTCTTGTCCAAGATCTGGTCCTCGAAGA GCAAAAGCGGGCAGGCCTGA
Translation (1009 aa): MAAIKALQEWCRQQCEGYRDVSITNMTTSFRDGLAFCAILHRHRPDLINFSALRKENIYENNKLAFQVAE EQLGIPALLDAEDMVALKVPDRLSILTYVSQYYNYFHGRSPIGGMAGIKRPSSDSTEELSGKKGLSQPAK LPSPAQTQRSPLSPARTNPVVQRNEGGSQRPSPKAAPGTAGSSVSSICGVCGKHVHLVQRHLADGRLYHR SCFRCKQCSSTLHSGAYRATGEPGVFVCTHHSSEVTSVSPKSSNLASRKPGGVTADTRPFGVSWTVQEAN GEGTPLRVRTAAWEHAGGNTTAKGFVQTELKPPSTSQVHVGSSAGPKLPTITVTTTSVTSKALTHVTNSS PIGWSSPAQSSPANFNSRPVVSPSARNTHLPGSQGQTASKGVKTQLNLNSESSNTAVTPAWTSSASKTQQ AREKFFQTPPSAPAPASAPAPAPTSKVPTVVTVPTSKVPNVVTAPTSKVPTVVTVPTSKVPTVVSAPTSK VPTVVSAPTSKVPTVVNSTNSRVTTVVNAPTSKVPTVVSATNGRVPTVVTAHTGRVPAVMNTSASKVSPV VDAPAQESSREQALSVLRKALPALTGSGTQAPNRSFPATSSVLVTLPKNEVPQKVPSDKLSALTTQTPNF TIKLEPSAPVNVGNTAVFLQAGKKSPSISPRVGKTSVGSRPQAEVAGVKGPGPISQEGQEEGPEGWRARL KPVDKKTPAGRSLEQKEPVLAEPRIGDTSRKASSSSDSSVHITLTSIQHKRKPCPAGSGPSPAALSPSPS HRKKLAVPPSLDVSADWLQPEPKKQEDGTRSCKEEKSPTRWSRERSAVLDSGLAPPGEAVTSPVRLHPDY IPQEELQRQLQDIESQLDALELRGVELEKRLRAAEGDASEDSLMVDWFRLIHEKQLLLRLESELMYKSKD QRLEEQQLDLQGELRRLMDKPEGLKSPQDRQREQELLSQYVNTVNDRSDIVDFLDEDRLREQEEDQMLEN MIQNLGLQRKKSKSFLSKIWSSKSKSGQA
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