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Report for CCDS20370.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20370.2 Public Mus musculus 6 Ccdc174 23 108 98 CCDS HistoryNCBI Gene:232236Re-query CCDS DB by CCDS ID:20370.2See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20370.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037783.6 ENSMUSP00000049280.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037783.6Link to Ensembl Protein Viewer:ENSMUSP00000049280.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037783Re-query CCDS DB by Protein ID:ENSMUSP00000049280
Original member Current member NCBI NM_172730.2 NP_766318.2 Accepted alive Link to Nucleotide Sequence:NM_172730.2Link to Protein Sequence:NP_766318.2Re-query CCDS DB by Nucleotide ID:NM_172730Re-query CCDS DB by Protein ID:NP_766318Link to BLAST:NP_766318.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766318.2 467 Q3U155 467 99.7859% 0 1

Chromosomal Locations for CCDS 20370.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 91878145 91878186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91880257 91880361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91881247 91881347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91885348 91885406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91888070 91888250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91890794 91890889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91892856 91892998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91893406 91893500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91895214 91895346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91898147 91898299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91899292 91899587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGACCGAAAGAAAAAGCCTTTGGACGTTACAGCCTCCTCGTTGGTAGATCTTAAGGCGGAGCTCTTTC
GAAAACAAGAAGAATTCAAACAAGAAAAACTTCTAAAAGATTCTGGAGTTTTTGGAAAACCAAAGACAAT
TAATAAGAAGCCAAGTATCTGGAGCAAACAAAATGCAGGTGTTACAAGTCGAGCAGAGAAAGATGCGGAA
CAAAAGCTTGAGGAGCAGAAGACTCTAGACAAAGCAAGGGAAAAATTGGAAGAAAAGGCCAAATTATATG
AAAAGATGACTAAAGGAGATTTTCTAGATGAGGAAGTGGAGGACATGTACCTTGTGGATTTCACACAGAA
GATCATAGACAAGCGAAAAGAAATGGAGGTGCTTGGTGCCACGAGAGAGTCCCAAATCGAGGAAGAGAGA
GATGATGATGATAAAGAAGAGTTTTCTGACAAAGACATACCTCCTCCTCAAGACCCCAGTGAGGAATGGG
TGGATTACGTGGACTCTTTGGGCCGATCCCGGCGCTGCATGAGAAAGGATTTACCAAGTCTATTGGAGAT
GGATAAAAATCTTCAGGGGAGACTTTTTGTTAGTCCTGCCAATGAAAAAACTTTGTTATCTGAAGACATG
AGGAAAGAACTTCAGCGTCAGCAATGGGAGGAAGAAGAAAGGGAAGCCTTGAAAAAGCCAATGGGGCCCA
TCCATTATGAAGACATCCGGGAAAATGAGGCCCGACAACTTGGTGTTGGGTATTTTGCCTTTGCCCGAGA
CAAAGAGTTAAGAAACAAGCAAATGAAAACTTTAGAGATGCTTCGTGAACAGACAACAGATCAGAGAATA
AAACGAGAAAACATAAAGGAAAAGAGAAAAGCTATGTTAGAAGCAAGACTGGCAAAGCTTCGACAAAAGA
AGATGAAAAAATCAAAAGAGGATGGAACTGAAGAAGAAGGCAGAGAAGCAGATGGAGTTGTTCCTGAGCC
CTCAGAGCCAAAGCCTGTACCTGCCCCAGCTCCTGTGGCCCAGAACAGCAAGGTGGAGGTCATCATTCAG
GAGAGGAGGGACACCAAGCCTGGGGTGCCACACATCCGAGAGTGGGACCGAGGGAAAGACTTTTCCTTTG
GATTCTGGTCGAAGAAGCAGTCAGAACTCCGAGCTGAGCGAGATCCTGAGTTTGCCCCACCTTCAAATTA
CTTTGTGGGTCAAAAGAGAACTGCTCCTATGAGTAGCCAGCCACAGAGCAGACCAGGATCAGCACCAAGT
GACTTGGGACATTCCTCTGGCCAGAGCCAGGAACCCAGCTCTTCACACACATCCACTCCTGCCTCTGAAA
GCTCACCACAAGCGCCCACAGTCACTTTCCAAACACTAGATGATATGATATCTTATTATAAACAAGTCAC
ATGA

Translation (467 aa):
MDRKKKPLDVTASSLVDLKAELFRKQEEFKQEKLLKDSGVFGKPKTINKKPSIWSKQNAGVTSRAEKDAE
QKLEEQKTLDKAREKLEEKAKLYEKMTKGDFLDEEVEDMYLVDFTQKIIDKRKEMEVLGATRESQIEEER
DDDDKEEFSDKDIPPPQDPSEEWVDYVDSLGRSRRCMRKDLPSLLEMDKNLQGRLFVSPANEKTLLSEDM
RKELQRQQWEEEEREALKKPMGPIHYEDIRENEARQLGVGYFAFARDKELRNKQMKTLEMLREQTTDQRI
KRENIKEKRKAMLEARLAKLRQKKMKKSKEDGTEEEGREADGVVPEPSEPKPVPAPAPVAQNSKVEVIIQ
ERRDTKPGVPHIREWDRGKDFSFGFWSKKQSELRAERDPEFAPPSNYFVGQKRTAPMSSQPQSRPGSAPS
DLGHSSGQSQEPSSSHTSTPASESSPQAPTVTFQTLDDMISYYKQVT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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