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Report for CCDS20964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20964.1 Public Mus musculus 7 Lypd4 23 108 98 CCDS HistoryNCBI Gene:232973Re-query CCDS DB by CCDS ID:20964.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079306.10 ENSMUSP00000078287.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079306.10Link to Ensembl Protein Viewer:ENSMUSP00000078287.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079306Re-query CCDS DB by Protein ID:ENSMUSP00000078287
Original member NCBI NM_182785.3 NP_877586.1 Updated not alive Link to Nucleotide Sequence:NM_182785.3Link to Protein Sequence:NP_877586.1Re-query CCDS DB by Nucleotide ID:NM_182785Re-query CCDS DB by Protein ID:NP_877586
Current member NCBI NM_182785.4 NP_877586.1 Accepted alive Link to Nucleotide Sequence:NM_182785.4Link to Protein Sequence:NP_877586.1Re-query CCDS DB by Nucleotide ID:NM_182785Re-query CCDS DB by Protein ID:NP_877586Link to BLAST:NP_877586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877586.1 246 Q8BVP6 246 100% 0 0

Chromosomal Locations for CCDS 20964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24864691 24864893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24865174 24865500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24866687 24866830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24867228 24867294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGATACTGCAGGCCTGGAGATCTCTGCAGCTGCTGTACCTCTTAGAAGCCATCTCTTTACTGCCTTGTA
CTGAAGCTCTTCTGTGCTATGAGGCGACAGCATCAGCCTTCAGAGCCGTGTCCTTGCATAACTGGAAGTG
GCTTCTGTTGAGGAGCATGGTGTGCAATCAGAGAGAGGGCTGCGAGGAGACCGTAGTGTTCATCGAGACG
GGGACCAGTAAGGGAGTCCTGAGTTTCAAAGGCTGCAGCTCCGCCTTTTCTTACCCTCCACAAATCTCCT
ACCTCGTGTCTCCGCCCGGAGTGTCCATTGCCTCCTACAGCCGCGTCTGCAGGTCCTATCTCTGCAACAA
CCTAACCAACCTGGAGCCTTTTGTGAGACTCAAGGCCAGTCAACCCATGTCCACACTACCTTCTGCCAAA
AGCTGTCCAAGCTGCGTGGGCAAGCACGACCAGGAATGTCTTCCAAGCTTTGTCACCACAGAGAATTGCC
CCTTTGCTGCTTCCTCATGTTACAGTTCCACCTTAAAATTTCAAGCAGGGAATCTCAATACCACCTTCCT
CATCATGGGCTGTGCTCGTGACTCACACAAGCTTTTAGCAGATTTTCAGCACATTGGGAGCATCCGAGTG
ACTGAGGTCATCAATGTCCTAGATAAGTCCGAGGCTGTCAGTGCAGGGCACTGCAGTCAAGGTATCTCTT
GGAGTGTTCTCTTATGCCTTCTTATACTCCTCAGAGATTGA

Translation (246 aa):
MILQAWRSLQLLYLLEAISLLPCTEALLCYEATASAFRAVSLHNWKWLLLRSMVCNQREGCEETVVFIET
GTSKGVLSFKGCSSAFSYPPQISYLVSPPGVSIASYSRVCRSYLCNNLTNLEPFVRLKASQPMSTLPSAK
SCPSCVGKHDQECLPSFVTTENCPFAASSCYSSTLKFQAGNLNTTFLIMGCARDSHKLLADFQHIGSIRV
TEVINVLDKSEAVSAGHCSQGISWSVLLCLLILLRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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